SNP Profiles of GU 123 /C   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
5._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
6._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCC__AA
7._GC-01-095-5-12
AACCCCGGGGCCCCCCCCGGTTCCTTAA
8._GU_123_/C
AACCCC________CCCCGG__CC____
9._GU_123_/C
AACCCC________CCCCGG__CC____
10._GU_123_/C
AACCCC________CCCCGG__CC____
11._GU_123_/C
AACCCC________CCCCGG__CC____
12._GU_123_/C
AACCCC________CCCCGG__CC____
13._GU_123_/C
AACCCC________CCCCGG__CC____
14._GU_123_/C
AACCCC________CCCCGG__CC____
15._GU_123_/C
AACCCC________CCCCGG__CC____
16._GU_123_/C
AACCCC________CCCCGG__CC____
17._GC-01-95-5-12
AA__CCGGGG__GGGG__GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGCCAATTGGTTAACCGGAA
1._GC-01-095-5-12
CCGGGGCCGGCCAATTGGTTAACCGGAA
2._GC-01-095-5-12
CCGGGGCCGGCCAATTGGTTAACCGGAA
3._GC-01-095-5-12
CCGGGGCCGGCCAATTGGTTAACCGGAA
4._GC-01-095-5-12
CCGGGGCCGGCCAATTGGTTAACCGGAA
5._GC-01-095-5-12
CCGGGGCCGGCCAATTGGTTAACCGGAA
6._GC-01-095-5-12
CCGGGGCCGGCCAATTGGTTAACCGGAA
7._GC-01-095-5-12
CCGGGGCCGGCCAATTGGTTAACCGGAA
8._GU_123_/C
__GG____GG________TTAA__GGAA
9._GU_123_/C
__GG____GG________TTAA__GGAA
10._GU_123_/C
__GG____GG________TTAA__GGAA
11._GU_123_/C
__GG____GG________TTAA__GGAA
12._GU_123_/C
__GG____GG________TTAA__GGAA
13._GU_123_/C
__GG____GG________TTAA__GGAA
14._GU_123_/C
__GG____GG________TTAA__GGAA
15._GU_123_/C
__GG____GG________TTAA__GGAA
16._GU_123_/C
__GG____GG________TTAA__GGAA
17._GC-01-95-5-12
CCGGCC__GGGGAAAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCAATTGGGGGGCCAGCCGG
1._GC-01-095-5-12
TTTTGGCCCCAATTGGGGGGCCAGCCGG
2._GC-01-095-5-12
TTTTGGCCCCAATTGGGGGGCCAGCCGG
3._GC-01-095-5-12
TTTTGGCCCCAATTGGGGGGCCAGCCGG
4._GC-01-095-5-12
TTTTGGCCCCAATTGGGGGGCCAGCCGG
5._GC-01-095-5-12
TTTTGGCCCCAATTGGGGGGCCAGCCGG
6._GC-01-095-5-12
TTTTGGCCCCAATTGGGGGGCCAGCCGG
7._GC-01-095-5-12
TT__GGCCCCAATTGGGGGGCCAGCCGG
8._GU_123_/C
______CC__AATT____GG________
9._GU_123_/C
______CC__AATT____GG________
10._GU_123_/C
______CC__AATT____GG________
11._GU_123_/C
______CC__AATT____GG________
12._GU_123_/C
______CC__AATT____GG________
13._GU_123_/C
______CC__AATT____GG________
14._GU_123_/C
______CC__AATT____GG________
15._GU_123_/C
______CC__AATT____GG________
16._GU_123_/C
______CC__AATT____GG________
17._GC-01-95-5-12
AAAAGGCCCCAAAACCCCGGGGAGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-095-5-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-095-5-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-095-5-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-01-095-5-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-01-095-5-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-01-095-5-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-01-095-5-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GU_123_/C
__TT__________________TTCC__
9._GU_123_/C
__TT__________________TTCC__
10._GU_123_/C
__TT__________________TTCC__
11._GU_123_/C
__TT__________________TTCC__
12._GU_123_/C
__TT__________________TTCC__
13._GU_123_/C
__TT__________________TTCC__
14._GU_123_/C
__TT__________________TTCC__
15._GU_123_/C
__TT__________________TTCC__
16._GU_123_/C
__TT__________________TTCC__
17._GC-01-95-5-12
__AA__GGAAGG__GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GC-01-095-5-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GC-01-095-5-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GC-01-095-5-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GC-01-095-5-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GC-01-095-5-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GC-01-095-5-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GC-01-095-5-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
8._GU_123_/C
__CC__CCAAGG__AAGGGGGG______
9._GU_123_/C
__CC__CCAAGG__AAGGGGGG______
10._GU_123_/C
__CC__CCAAGG__AAGGGGGG______
11._GU_123_/C
__CC__CCAAGG__AAGGGGGG______
12._GU_123_/C
__CC__CCAAGG__AAGGGGGG______
13._GU_123_/C
__CC__CCAAGG__AAGGGGGG______
14._GU_123_/C
__CC__CCAAGG__AAGGGGGG______
15._GU_123_/C
__CC__CCAAGG__AAGGGGGG______
16._GU_123_/C
__CC__CCAAGG__AAGGGGGG______
17._GC-01-95-5-12
GGGGGGGGAAGGGGAAGGCCCCAA____
 7172737475767778798081828384
_Input profile
AACCAAGGCCCCGGAAGGCCTTAATTCT
1._GC-01-095-5-12
AACCAAGGCCCCGGAAGGCCTTAATTCT
2._GC-01-095-5-12
AACCAAGGCCCCGGAAGGCCTTAATTCT
3._GC-01-095-5-12
AACCAAGGCCCCGGAAGGCCTTAATTCT
4._GC-01-095-5-12
AACCAAGGCCCCGGAAGGCCTTAATTCT
5._GC-01-095-5-12
AACCAAGGCCCCGGAAGGCCTTAATTCT
6._GC-01-095-5-12
AACCAAGGCCCCGGAAGGCCTTAATTCT
7._GC-01-095-5-12
AACCAAGGCCCCGGAAGGCCTT__TTCT
8._GU_123_/C
AACC__________AAGG______TTCT
9._GU_123_/C
AACC__________AAGG______TTCT
10._GU_123_/C
AACC__________AAGG______TTCT
11._GU_123_/C
AACC__________AAGG______TTCT
12._GU_123_/C
AACC__________AAGG______TTCT
13._GU_123_/C
AACC__________AAGG______TTCT
14._GU_123_/C
AACC__________AAGG______TTCT
15._GU_123_/C
AACC__________AAGG______TTCT
16._GU_123_/C
AACC__________AAGG______TTCT
17._GC-01-95-5-12
__GGAAGGCCCC__AACCGGTTAAAAAG
 858687888990919293     
_Input profile
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-01-095-5-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-01-095-5-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-01-095-5-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-01-095-5-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-01-095-5-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-01-095-5-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-01-095-5-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
8._GU_123_/C
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
9._GU_123_/C
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
10._GU_123_/C
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
11._GU_123_/C
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
12._GU_123_/C
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
13._GU_123_/C
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
14._GU_123_/C
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
15._GU_123_/C
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
16._GU_123_/C
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
17._GC-01-95-5-12
__GG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: GU_123_/C GC-01-095-5-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

1._GU_123_/C GC-01-095-5-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

2._GU_123_/C GC-01-095-5-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._GU_123_/C GC-01-095-5-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

4._GU_123_/C GC-01-095-5-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._GU_123_/C GC-01-095-5-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._GU_123_/C GC-01-095-5-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._GU_123_/C GC-01-095-5-12

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP4
 Mars, 2018

8._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 13 > FP4
 Dapeng Zhang, 2016

9._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 3
 Dapeng Zhang, 2016

11._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 6
 Dapeng Zhang, 2016

12._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 9
 Dapeng Zhang, 2016

13._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 14
 Dapeng Zhang, 2016

14._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 1 > FP
 Dapeng Zhang, 2016

15._GU_123_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1512 4 > FP3
 Dapeng Zhang, 2016

16._GU_123_/C

identical
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: Q6_EXT_2 44
 Dapeng Zhang, 2016

17._GU_123_/C GC-01-95-5-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240