SNP Profiles of GU 123 /C View Data

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_Input profile	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
1._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
2._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
3._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
4._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
5._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
6._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	__	AA
7._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
8._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
9._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
10._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
11._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
12._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
13._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
14._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
15._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
16._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
17._GC-01-95-5-12	AA	__	CC	GG	GG	__	GG	GG	__	GG	AA	GG	AA	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
1._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
2._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
3._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
4._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
5._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
6._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
7._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
8._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
9._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
10._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
11._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
12._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
13._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
14._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
15._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
16._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
17._GC-01-95-5-12	CC	GG	CC	__	GG	GG	AA	AA	GG	TT	AA	GG	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
1._GC-01-095-5-12	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
2._GC-01-095-5-12	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
3._GC-01-095-5-12	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
4._GC-01-095-5-12	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
5._GC-01-095-5-12	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
6._GC-01-095-5-12	TT	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
7._GC-01-095-5-12	TT	__	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG
8._GU_123_/C	__	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__
9._GU_123_/C	__	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__
10._GU_123_/C	__	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__
11._GU_123_/C	__	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__
12._GU_123_/C	__	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__
13._GU_123_/C	__	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__
14._GU_123_/C	__	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__
15._GU_123_/C	__	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__
16._GU_123_/C	__	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__
17._GC-01-95-5-12	AA	AA	GG	CC	CC	AA	AA	CC	CC	GG	GG	AG	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT
1._GC-01-095-5-12	TT	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT
2._GC-01-095-5-12	TT	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT
3._GC-01-095-5-12	TT	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT
4._GC-01-095-5-12	TT	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT
5._GC-01-095-5-12	TT	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT
6._GC-01-095-5-12	TT	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT
7._GC-01-095-5-12	TT	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT
8._GU_123_/C	__	TT	__	__	__	__	__	__	__	__	__	TT	CC	__
9._GU_123_/C	__	TT	__	__	__	__	__	__	__	__	__	TT	CC	__
10._GU_123_/C	__	TT	__	__	__	__	__	__	__	__	__	TT	CC	__
11._GU_123_/C	__	TT	__	__	__	__	__	__	__	__	__	TT	CC	__
12._GU_123_/C	__	TT	__	__	__	__	__	__	__	__	__	TT	CC	__
13._GU_123_/C	__	TT	__	__	__	__	__	__	__	__	__	TT	CC	__
14._GU_123_/C	__	TT	__	__	__	__	__	__	__	__	__	TT	CC	__
15._GU_123_/C	__	TT	__	__	__	__	__	__	__	__	__	TT	CC	__
16._GU_123_/C	__	TT	__	__	__	__	__	__	__	__	__	TT	CC	__
17._GC-01-95-5-12	__	AA	__	GG	AA	GG	__	GG	GG	AA	AA	AA	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC
1._GC-01-095-5-12	GG	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC
2._GC-01-095-5-12	GG	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC
3._GC-01-095-5-12	GG	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC
4._GC-01-095-5-12	GG	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC
5._GC-01-095-5-12	GG	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC
6._GC-01-095-5-12	GG	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC
7._GC-01-095-5-12	GG	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC
8._GU_123_/C	__	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__
9._GU_123_/C	__	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__
10._GU_123_/C	__	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__
11._GU_123_/C	__	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__
12._GU_123_/C	__	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__
13._GU_123_/C	__	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__
14._GU_123_/C	__	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__
15._GU_123_/C	__	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__
16._GU_123_/C	__	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__
17._GC-01-95-5-12	GG	GG	GG	GG	AA	GG	GG	AA	GG	CC	CC	AA	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AA	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT
1._GC-01-095-5-12	AA	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT
2._GC-01-095-5-12	AA	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT
3._GC-01-095-5-12	AA	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT
4._GC-01-095-5-12	AA	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT
5._GC-01-095-5-12	AA	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT
6._GC-01-095-5-12	AA	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	AA	TT	CT
7._GC-01-095-5-12	AA	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	__	TT	CT
8._GU_123_/C	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT	CT
9._GU_123_/C	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT	CT
10._GU_123_/C	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT	CT
11._GU_123_/C	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT	CT
12._GU_123_/C	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT	CT
13._GU_123_/C	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT	CT
14._GU_123_/C	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT	CT
15._GU_123_/C	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT	CT
16._GU_123_/C	AA	CC	__	__	__	__	__	AA	GG	__	__	__	TT	CT
17._GC-01-95-5-12	__	GG	AA	GG	CC	CC	__	AA	CC	GG	TT	AA	AA	AG

	85	86	87	88	89	90	91	92	93
_Input profile	CC	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
1._GC-01-095-5-12	CC	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
2._GC-01-095-5-12	CC	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
3._GC-01-095-5-12	CC	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
4._GC-01-095-5-12	CC	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
5._GC-01-095-5-12	CC	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
6._GC-01-095-5-12	CC	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
7._GC-01-095-5-12	CC	CC	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
8._GU_123_/C	CC	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
9._GU_123_/C	CC	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
10._GU_123_/C	CC	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
11._GU_123_/C	CC	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
12._GU_123_/C	CC	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
13._GU_123_/C	CC	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
14._GU_123_/C	CC	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
15._GU_123_/C	CC	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
16._GU_123_/C	CC	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X
17._GC-01-95-5-12	__	GG	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X

Input profile: GU_123_/C GC-01-095-5-12

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

1._GU_123_/C GC-01-095-5-12

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

2._GU_123_/C GC-01-095-5-12

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

3._GU_123_/C GC-01-095-5-12

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

4._GU_123_/C GC-01-095-5-12

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

5._GU_123_/C GC-01-095-5-12

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._GU_123_/C GC-01-095-5-12

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._GU_123_/C GC-01-095-5-12

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP4

8._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 13 > FP4

Dapeng Zhang, 2016

9._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 3

Dapeng Zhang, 2016

11._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 6

Dapeng Zhang, 2016

12._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 9

Dapeng Zhang, 2016

13._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 14

Dapeng Zhang, 2016

14._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 1 > FP

Dapeng Zhang, 2016

15._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 4 > FP3

Dapeng Zhang, 2016

16._GU_123_/C

identical
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: Q6_EXT_2 44

Dapeng Zhang, 2016

17._GU_123_/C GC-01-95-5-12

48.1 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 12, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP1062	17	TcSNP836	18	TcSNP878	19	TcSNP929	20	TcSNP413
21	TcSNP653	22	TcSNP1149	23	TcSNP174	24	TcSNP32	25	TcSNP372
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP689	48	TcSNP944	49	TcSNP1242	50	TcSNP1383
51	TcSNP547	52	TcSNP776	53	TcSNP1309	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240