SNP Profiles of GU-171C   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GC-01-094-5-11
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GC-01-094-5-11
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GC-01-094-5-11
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GC-01-094-5-11
AACCCCGGGGCCCCCCCCGGTTCCTTAA
5._GC-01-094-5-11
AACCCCGGGGCCCCCCCCGGTTCCTTAA
6._GC-01-094-5-11
AACCCCGGGGCCCCCCCCGGTTCCTTAA
7._RUQ_195
_CCCC__CC_CC__TTCC__
8._GU_171_/C
AACCCC____CCCCGG_CC__
9._GU_171_/C
AACCCC____CCCCGG_CC__
10._GU_171_/C
AACCCC____CCCCGG_CC__
11._GU_171_/C
AACCCC____CCCCGG_CC__
12._GU_171_/C
AACCCC____CCCCGG_CC__
13._GU_171_/C
AACCCC____CCCCGG_CC__
14._GU_171_/C
AACCCC____CCCCGG_CC__
15._RUQ_195
AACCCC____CCCCAG_CC__
16._RUQ_195
__CC__CC________
17._GC-01-94-5-11
AA_CCGGGG_GGGG_GGAAGGAATT
18._GC-01-94-5-11
AA_CCGGGG_GGGG_GGAAGGAATT
19._RUQ_195
AA_CCGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GC-01-094-5-11
CCGGGGCCGGTTAATTGGTTAACCGGAA
2._GC-01-094-5-11
CCGGGGCCGGTTAATTGGTTAACCGGAA
3._GC-01-094-5-11
CCGGGGCCGGTTAATTGGTTAACCGGAA
4._GC-01-094-5-11
CCGGGGCCGGTTAATTGGTTAACCGGAA
5._GC-01-094-5-11
CCGGGGCCGGTTAATTGGTTAACCGGAA
6._GC-01-094-5-11
CCGGGGCCGGTTAATTGGTTAACCGGAA
7._RUQ_195
___CC____GG_AACCGG_
8._GU_171_/C
_GG__GG____TTAA_GGAA
9._GU_171_/C
_GG__GG____TTAA_GGAA
10._GU_171_/C
_GG__GG____TTAA_GGAA
11._GU_171_/C
_GG__GG____TTAA_GGAA
12._GU_171_/C
_GG__GG____TTAA_GGAA
13._GU_171_/C
_GG__GG____TTAA_GGAA
14._GU_171_/C
_GG__GG____TTAA_GGAA
15._RUQ_195
_GG__GG____TTAA_GGAA
16._RUQ_195
_GGCC_________GG_
17._GC-01-94-5-11
CCGGCC_GGAAGGAAGGTTAAGGCCAA
18._GC-01-94-5-11
CCGGCC_GGAAGGAAGGTTAAGGCCAA
19._RUQ_195
CCGGCC_GGAAGGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCAATTGGGTAACCGGCCGG
1._GC-01-094-5-11
TTTTGGCCCCAATTGGGTAACCGGCCGG
2._GC-01-094-5-11
TTTTGGCCCCAATTGGGTAACCGGCCGG
3._GC-01-094-5-11
TTTTGGCCCCAATTGGGTAACCGGCCGG
4._GC-01-094-5-11
TTTTGGCCCCAATTGGGTAACCGGCCGG
5._GC-01-094-5-11
TTTTGGCCCCAATTGGGTAACCGGCCGG
6._GC-01-094-5-11
TTTTGGCC_AATTGGGTAACCGGCCGG
7._RUQ_195
__GGCCCCAATT__AACC__GG
8._GU_171_/C
___CC_AATT__AA____
9._GU_171_/C
___CC_AATT__AA____
10._GU_171_/C
___CC_AATT__AA____
11._GU_171_/C
___CC_AATT__AA____
12._GU_171_/C
___CC_AATT__AA____
13._GU_171_/C
___CC_AATT__AA____
14._GU_171_/C
___CC_AATT__AA____
15._RUQ_195
___CC_AATT__AG____
16._RUQ_195
___CC_AA____CC___
17._GC-01-94-5-11
AAAAGGCCCCAAAA_ACAAGGGGGGCC
18._GC-01-94-5-11
AAAAGGCCCCAAAACCACAAGGGGGGCC
19._RUQ_195
AAAAGGCCCCAAAACCACAAGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-094-5-11
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-094-5-11
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-094-5-11
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-01-094-5-11
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-01-094-5-11
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-01-094-5-11
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._RUQ_195
TT__GG______TTTT_TT
8._GU_171_/C
_TT_________TTCC_
9._GU_171_/C
_TT_________TTCC_
10._GU_171_/C
_TT_________TTCC_
11._GU_171_/C
_TT_________TTCC_
12._GU_171_/C
_TT_________TTCC_
13._GU_171_/C
_TT_________TTCC_
14._GU_171_/C
_TT_________TTCC_
15._RUQ_195
_TT_________TTCC_
16._RUQ_195
___GG__________
17._GC-01-94-5-11
_AA_GGAAGG_GGGGAAAAAAGGAA
18._GC-01-94-5-11
_AA_GGAAGG_GGGGAAAAAAGGAA
19._RUQ_195
_AA_GGAAGG_GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GC-01-094-5-11
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GC-01-094-5-11
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GC-01-094-5-11
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GC-01-094-5-11
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GC-01-094-5-11
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GC-01-094-5-11
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._RUQ_195
GGCCCCCCAA_GGAAGGGGGGAA__
8._GU_171_/C
_CC_CCAAGG_AAGGGGGG___
9._GU_171_/C
_CC_CCAAGG_AAGGGGGG___
10._GU_171_/C
_CC_CCAAGG_AAGGGGGG___
11._GU_171_/C
_CC_CCAAGG_AAGGGGGG___
12._GU_171_/C
_CC_CCAAGG_AAGGGGGG___
13._GU_171_/C
_CC_CCAAGG_AAGGGGGG___
14._GU_171_/C
_CC_CCAAGG_AAGGGGGG___
15._RUQ_195
_CC_CCAAGG_AAGGGGGG___
16._RUQ_195
GG______AAGG_GGAA__
17._GC-01-94-5-11
GGGGGGGGAAGGGGAAGGCCCCAA__
18._GC-01-94-5-11
GGGGGGGGAAGGGGAAGGCCCCAA__
19._RUQ_195
GGGGGGGGAAGGGGAAGGCCCCAA__
 7172737475767778798081828384
_Input profile
GGCCCCGGCCCCGGAAGGCCTTAACCTT
1._GC-01-094-5-11
GGCCCCGGCCCCGGAAGGCCTTAACCTT
2._GC-01-094-5-11
GGCCCCGGCCCCGGAAGGCCTTAACCTT
3._GC-01-094-5-11
GGCCCCGGCCCCGGAAGGCCTTAACCTT
4._GC-01-094-5-11
GGCCCCGGCCCCGGAAGGCCTTAACCTT
5._GC-01-094-5-11
GGCCCCGGCCCCGGAAGGCCTTAACCTT
6._GC-01-094-5-11
GGCCCCGGCCCCGGAAGGCCTTAACCTT
7._RUQ_195
_______AAGG__AACC_
8._GU_171_/C
GGCC_____AAGG___CCTT
9._GU_171_/C
GGCC_____AAGG___CCTT
10._GU_171_/C
GGCC_____AAGG___CCTT
11._GU_171_/C
GGCC_____AAGG___CCTT
12._GU_171_/C
GGCC_____AAGG___CCTT
13._GU_171_/C
GGCC_____AAGG___CCTT
14._GU_171_/C
GGCC_____AAGG___CCTT
15._RUQ_195
AACC_____AAGG___CCTT
16._RUQ_195
AA_______GG__AA__
17._GC-01-94-5-11
_GGCCGGCCCC_AACCGGTTAAGGAA
18._GC-01-94-5-11
_GGCCGGCCCC_AACCGGTTAAGGAA
19._RUQ_195
_GGCCGGCCCC_AACCGGTTAAGGAA
 858687888990919293     
_Input profile
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-01-094-5-11
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-01-094-5-11
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-01-094-5-11
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-01-094-5-11
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-01-094-5-11
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-01-094-5-11
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
7._RUQ_195
__AGCCCCTT___X_XX_XX_XX_XX_X
8._GU_171_/C
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
9._GU_171_/C
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
10._GU_171_/C
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
11._GU_171_/C
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
12._GU_171_/C
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
13._GU_171_/C
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
14._GU_171_/C
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
15._RUQ_195
CC_AG_CCTTTT__X_XX_XX_XX_XX_X
16._RUQ_195
CC__CC_TT___X_XX_XX_XX_XX_X
17._GC-01-94-5-11
_GG__GGAAAATTGGX_XX_XX_XX_XX_X
18._GC-01-94-5-11
_GG__GGAAAATTGGX_XX_XX_XX_XX_X
19._RUQ_195
_GG__GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: GU_171_/C GC-01-094-5-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

1._GU_171_/C GC-01-094-5-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

2._GU_171_/C GC-01-094-5-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._GU_171_/C GC-01-094-5-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

4._GU_171_/C GC-01-094-5-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._GU_171_/C GC-01-094-5-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

6._GU_171_/C GC-01-094-5-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._GU_171_/C RUQ_195

identical
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 2 > FP
 Dapeng Zhang, 2016

9._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 9
 Dapeng Zhang, 2016

11._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 12
 Dapeng Zhang, 2016

12._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 14
 Dapeng Zhang, 2016

13._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 1 > FP
 Dapeng Zhang, 2016

14._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 10 > F
 Dapeng Zhang, 2016

15._GU_171_/C RUQ_195

94.9 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_171_/C RUQ_195

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._GU_171_/C GC-01-94-5-11

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

18._GU_171_/C GC-01-94-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._GU_171_/C RUQ_195

46.8 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240