SNP Profiles of GU 171 /C   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GC-01-094-5-11
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GC-01-094-5-11
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GC-01-094-5-11
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GC-01-094-5-11
AACCCCGGGGCCCCCCCCGGTTCCTTAA
5._GC-01-094-5-11
AACCCCGGGGCCCCCCCCGGTTCCTTAA
6._GC-01-094-5-11
AACCCCGGGGCCCCCCCCGGTTCCTTAA
7._RUQ_195
__CCCC____CC__CC____TTCC____
8._GU_171_/C
AACCCC________CCCCGG__CC____
9._GU_171_/C
AACCCC________CCCCGG__CC____
10._GU_171_/C
AACCCC________CCCCGG__CC____
11._GU_171_/C
AACCCC________CCCCGG__CC____
12._GU_171_/C
AACCCC________CCCCGG__CC____
13._GU_171_/C
AACCCC________CCCCGG__CC____
14._GU_171_/C
AACCCC________CCCCGG__CC____
15._RUQ_195
AACCCC________CCCCAG__CC____
16._RUQ_195
____CC____CC________________
17._GC-01-94-5-11
AA__CCGGGG__GGGG__GGAAGGAATT
18._GC-01-94-5-11
AA__CCGGGG__GGGG__GGAAGGAATT
19._RUQ_195
AA__CCGGGG__GGGG__GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GC-01-094-5-11
CCGGGGCCGGTTAATTGGTTAACCGGAA
2._GC-01-094-5-11
CCGGGGCCGGTTAATTGGTTAACCGGAA
3._GC-01-094-5-11
CCGGGGCCGGTTAATTGGTTAACCGGAA
4._GC-01-094-5-11
CCGGGGCCGGTTAATTGGTTAACCGGAA
5._GC-01-094-5-11
CCGGGGCCGGTTAATTGGTTAACCGGAA
6._GC-01-094-5-11
CCGGGGCCGGTTAATTGGTTAACCGGAA
7._RUQ_195
______CC________GG__AACCGG__
8._GU_171_/C
__GG____GG________TTAA__GGAA
9._GU_171_/C
__GG____GG________TTAA__GGAA
10._GU_171_/C
__GG____GG________TTAA__GGAA
11._GU_171_/C
__GG____GG________TTAA__GGAA
12._GU_171_/C
__GG____GG________TTAA__GGAA
13._GU_171_/C
__GG____GG________TTAA__GGAA
14._GU_171_/C
__GG____GG________TTAA__GGAA
15._RUQ_195
__GG____GG________TTAA__GGAA
16._RUQ_195
__GGCC__________________GG__
17._GC-01-94-5-11
CCGGCC__GGAAGGAAGGTTAAGGCCAA
18._GC-01-94-5-11
CCGGCC__GGAAGGAAGGTTAAGGCCAA
19._RUQ_195
CCGGCC__GGAAGGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCAATTGGGTAACCGGCCGGTT
1._GC-01-094-5-11
TTTTGGCCAATTGGGTAACCGGCCGGTT
2._GC-01-094-5-11
TTTTGGCCAATTGGGTAACCGGCCGGTT
3._GC-01-094-5-11
TTTTGGCCAATTGGGTAACCGGCCGGTT
4._GC-01-094-5-11
TTTTGGCCAATTGGGTAACCGGCCGGTT
5._GC-01-094-5-11
TTTTGGCCAATTGGGTAACCGGCCGGTT
6._GC-01-094-5-11
TTTTGGCCAATTGGGTAACCGGCCGGTT
7._RUQ_195
____GGCCAATT____AACC____GGTT
8._GU_171_/C
______CCAATT____AA__________
9._GU_171_/C
______CCAATT____AA__________
10._GU_171_/C
______CCAATT____AA__________
11._GU_171_/C
______CCAATT____AA__________
12._GU_171_/C
______CCAATT____AA__________
13._GU_171_/C
______CCAATT____AA__________
14._GU_171_/C
______CCAATT____AA__________
15._RUQ_195
______CCAATT____AG__________
16._RUQ_195
______CCAA________CC________
17._GC-01-94-5-11
AAAAGGCCAAAA__ACAAGGGGGGCC__
18._GC-01-94-5-11
AAAAGGCCAAAACCACAAGGGGGGCC__
19._RUQ_195
AAAAGGCCAAAACCACAAGGGGGGCC__
 4344454647484950515253545556
_Input profile
TTAAGGAACCCCGGGGTTTTTTCCTTGG
1._GC-01-094-5-11
TTAAGGAACCCCGGGGTTTTTTCCTTGG
2._GC-01-094-5-11
TTAAGGAACCCCGGGGTTTTTTCCTTGG
3._GC-01-094-5-11
TTAAGGAACCCCGGGGTTTTTTCCTTGG
4._GC-01-094-5-11
TTAAGGAACCCCGGGGTTTTTTCCTTGG
5._GC-01-094-5-11
TTAAGGAACCCCGGGGTTTTTTCCTTGG
6._GC-01-094-5-11
TTAAGGAACCCCGGGGTTTTTTCCTTGG
7._RUQ_195
____GG____________TTTT__TTGG
8._GU_171_/C
TT__________________TTCC____
9._GU_171_/C
TT__________________TTCC____
10._GU_171_/C
TT__________________TTCC____
11._GU_171_/C
TT__________________TTCC____
12._GU_171_/C
TT__________________TTCC____
13._GU_171_/C
TT__________________TTCC____
14._GU_171_/C
TT__________________TTCC____
15._RUQ_195
TT__________________TTCC____
16._RUQ_195
____GG____________________GG
17._GC-01-94-5-11
AA__GGAAGG__GGGGAAAAAAGGAAGG
18._GC-01-94-5-11
AA__GGAAGG__GGGGAAAAAAGGAAGG
19._RUQ_195
AA__GGAAGG__GGGGAAAAAAGGAAGG
 5758596061626364656667686970
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCGG
1._GC-01-094-5-11
CCCCCCAAGGGGAAGGGGGGAACCCCGG
2._GC-01-094-5-11
CCCCCCAAGGGGAAGGGGGGAACCCCGG
3._GC-01-094-5-11
CCCCCCAAGGGGAAGGGGGGAACCCCGG
4._GC-01-094-5-11
CCCCCCAAGGGGAAGGGGGGAACCCCGG
5._GC-01-094-5-11
CCCCCCAAGGGGAAGGGGGGAACCCCGG
6._GC-01-094-5-11
CCCCCCAAGGGGAAGGGGGGAACCCCGG
7._RUQ_195
CCCCCCAA__GGAAGGGGGGAA______
8._GU_171_/C
CC__CCAAGG__AAGGGGGG______GG
9._GU_171_/C
CC__CCAAGG__AAGGGGGG______GG
10._GU_171_/C
CC__CCAAGG__AAGGGGGG______GG
11._GU_171_/C
CC__CCAAGG__AAGGGGGG______GG
12._GU_171_/C
CC__CCAAGG__AAGGGGGG______GG
13._GU_171_/C
CC__CCAAGG__AAGGGGGG______GG
14._GU_171_/C
CC__CCAAGG__AAGGGGGG______GG
15._RUQ_195
CC__CCAAGG__AAGGGGGG______AA
16._RUQ_195
____________AAGG__GGAA____AA
17._GC-01-94-5-11
GGGGGGAAGGGGAAGGCCCCAA______
18._GC-01-94-5-11
GGGGGGAAGGGGAAGGCCCCAA______
19._RUQ_195
GGGGGGAAGGGGAAGGCCCCAA______
 7172737475767778798081828384
_Input profile
CCCCGGCCCCGGAAGGCCTTAACCTTCC
1._GC-01-094-5-11
CCCCGGCCCCGGAAGGCCTTAACCTTCC
2._GC-01-094-5-11
CCCCGGCCCCGGAAGGCCTTAACCTTCC
3._GC-01-094-5-11
CCCCGGCCCCGGAAGGCCTTAACCTTCC
4._GC-01-094-5-11
CCCCGGCCCCGGAAGGCCTTAACCTTCC
5._GC-01-094-5-11
CCCCGGCCCCGGAAGGCCTTAACCTTCC
6._GC-01-094-5-11
CCCCGGCCCCGGAAGGCCTTAACCTTCC
7._RUQ_195
____________AAGG____AACC____
8._GU_171_/C
CC__________AAGG______CCTTCC
9._GU_171_/C
CC__________AAGG______CCTTCC
10._GU_171_/C
CC__________AAGG______CCTTCC
11._GU_171_/C
CC__________AAGG______CCTTCC
12._GU_171_/C
CC__________AAGG______CCTTCC
13._GU_171_/C
CC__________AAGG______CCTTCC
14._GU_171_/C
CC__________AAGG______CCTTCC
15._RUQ_195
CC__________AAGG______CCTTCC
16._RUQ_195
______________GG____AA____CC
17._GC-01-94-5-11
GGCCGGCCCC__AACCGGTTAAGGAA__
18._GC-01-94-5-11
GGCCGGCCCC__AACCGGTTAAGGAA__
19._RUQ_195
GGCCGGCCCC__AACCGGTTAAGGAA__
 8586878889909192      
_Input profile
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-094-5-11
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-094-5-11
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-094-5-11
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-094-5-11
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-094-5-11
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-094-5-11
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._RUQ_195
__AGCCCCTT______X_XX_XX_XX_XX_XX_X
8._GU_171_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
9._GU_171_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
10._GU_171_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
11._GU_171_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
12._GU_171_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
13._GU_171_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
14._GU_171_/C
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
15._RUQ_195
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
16._RUQ_195
____CC__TT______X_XX_XX_XX_XX_XX_X
17._GC-01-94-5-11
GG____GGAAAATTGGX_XX_XX_XX_XX_XX_X
18._GC-01-94-5-11
GG____GGAAAATTGGX_XX_XX_XX_XX_XX_X
19._RUQ_195
GG____GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_171_/C GC-01-094-5-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._GU_171_/C GC-01-094-5-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._GU_171_/C GC-01-094-5-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

3._GU_171_/C GC-01-094-5-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._GU_171_/C GC-01-094-5-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

5._GU_171_/C GC-01-094-5-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._GU_171_/C GC-01-094-5-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

7._GU_171_/C RUQ_195

identical
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 2 > FP
 Dapeng Zhang, 2016

9._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 9
 Dapeng Zhang, 2016

11._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 12
 Dapeng Zhang, 2016

12._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 14
 Dapeng Zhang, 2016

13._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 1 > FP
 Dapeng Zhang, 2016

14._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 10 > F
 Dapeng Zhang, 2016

15._GU_171_/C RUQ_195

94.9 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_171_/C RUQ_195

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._GU_171_/C GC-01-94-5-11

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

18._GU_171_/C GC-01-94-5-11

46.2 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._GU_171_/C RUQ_195

46.2 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240