SNP Profiles of GU-171C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GU_171_/C___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GU_171_/C___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GU_171_/C___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GU_171_/C___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
5._GU_171_/C___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
6._GU_171_/C___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
7._GU_171_/C___
__CCCC____CC__CC____TTCC____
8._GU_171_/C___
AACCCC________CCCCGG__CC____
9._GU_171_/C___
AACCCC________CCCCGG__CC____
10._GU_171_/C___
AACCCC________CCCCGG__CC____
11._GU_171_/C___
AACCCC________CCCCGG__CC____
12._GU_171_/C___
AACCCC________CCCCGG__CC____
13._GU_171_/C___
AACCCC________CCCCGG__CC____
14._GU_171_/C___
AACCCC________CCCCGG__CC____
15._GU_171_/C___
AACCCC________CCCCAG__CC____
16._GU_171_/C___
____CC____CC________________
17._GU_171_/C___
AA__CCGGGG__GGGG__GGAAGGAATT
18._GU_171_/C___
AA__CCGGGG__GGGG__GGAAGGAATT
19._GU_171_/C___
AA__CCGGGG__GGGG__GGAAGGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GU_171_/C___
CCGGGGCCGGTTAATTGGTTAACCGGAA
2._GU_171_/C___
CCGGGGCCGGTTAATTGGTTAACCGGAA
3._GU_171_/C___
CCGGGGCCGGTTAATTGGTTAACCGGAA
4._GU_171_/C___
CCGGGGCCGGTTAATTGGTTAACCGGAA
5._GU_171_/C___
CCGGGGCCGGTTAATTGGTTAACCGGAA
6._GU_171_/C___
CCGGGGCCGGTTAATTGGTTAACCGGAA
7._GU_171_/C___
______CC________GG__AACCGG__
8._GU_171_/C___
__GG____GG________TTAA__GGAA
9._GU_171_/C___
__GG____GG________TTAA__GGAA
10._GU_171_/C___
__GG____GG________TTAA__GGAA
11._GU_171_/C___
__GG____GG________TTAA__GGAA
12._GU_171_/C___
__GG____GG________TTAA__GGAA
13._GU_171_/C___
__GG____GG________TTAA__GGAA
14._GU_171_/C___
__GG____GG________TTAA__GGAA
15._GU_171_/C___
__GG____GG________TTAA__GGAA
16._GU_171_/C___
__GGCC__________________GG__
17._GU_171_/C___
CCGGCC__GGAAGGAAGGTTAAGGCCAA
18._GU_171_/C___
CCGGCC__GGAAGGAAGGTTAAGGCCAA
19._GU_171_/C___
CCGGCC__GGAAGGAAGGTTAAGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTGGCCCCAATTGGGTAACCGGCCGG
1._GU_171_/C___
TTTTGGCCCCAATTGGGTAACCGGCCGG
2._GU_171_/C___
TTTTGGCCCCAATTGGGTAACCGGCCGG
3._GU_171_/C___
TTTTGGCCCCAATTGGGTAACCGGCCGG
4._GU_171_/C___
TTTTGGCCCCAATTGGGTAACCGGCCGG
5._GU_171_/C___
TTTTGGCCCCAATTGGGTAACCGGCCGG
6._GU_171_/C___
TTTTGGCC__AATTGGGTAACCGGCCGG
7._GU_171_/C___
____GGCCCCAATT____AACC____GG
8._GU_171_/C___
______CC__AATT____AA________
9._GU_171_/C___
______CC__AATT____AA________
10._GU_171_/C___
______CC__AATT____AA________
11._GU_171_/C___
______CC__AATT____AA________
12._GU_171_/C___
______CC__AATT____AA________
13._GU_171_/C___
______CC__AATT____AA________
14._GU_171_/C___
______CC__AATT____AA________
15._GU_171_/C___
______CC__AATT____AG________
16._GU_171_/C___
______CC__AA________CC______
17._GU_171_/C___
AAAAGGCCCCAAAA__ACAAGGGGGGCC
18._GU_171_/C___
AAAAGGCCCCAAAACCACAAGGGGGGCC
19._GU_171_/C___
AAAAGGCCCCAAAACCACAAGGGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GU_171_/C___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GU_171_/C___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GU_171_/C___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GU_171_/C___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GU_171_/C___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GU_171_/C___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GU_171_/C___
TT____GG____________TTTT__TT
8._GU_171_/C___
__TT__________________TTCC__
9._GU_171_/C___
__TT__________________TTCC__
10._GU_171_/C___
__TT__________________TTCC__
11._GU_171_/C___
__TT__________________TTCC__
12._GU_171_/C___
__TT__________________TTCC__
13._GU_171_/C___
__TT__________________TTCC__
14._GU_171_/C___
__TT__________________TTCC__
15._GU_171_/C___
__TT__________________TTCC__
16._GU_171_/C___
______GG____________________
17._GU_171_/C___
__AA__GGAAGG__GGGGAAAAAAGGAA
18._GU_171_/C___
__AA__GGAAGG__GGGGAAAAAAGGAA
19._GU_171_/C___
__AA__GGAAGG__GGGGAAAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GU_171_/C___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GU_171_/C___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GU_171_/C___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GU_171_/C___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GU_171_/C___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GU_171_/C___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GU_171_/C___
GGCCCCCCAA__GGAAGGGGGGAA____
8._GU_171_/C___
__CC__CCAAGG__AAGGGGGG______
9._GU_171_/C___
__CC__CCAAGG__AAGGGGGG______
10._GU_171_/C___
__CC__CCAAGG__AAGGGGGG______
11._GU_171_/C___
__CC__CCAAGG__AAGGGGGG______
12._GU_171_/C___
__CC__CCAAGG__AAGGGGGG______
13._GU_171_/C___
__CC__CCAAGG__AAGGGGGG______
14._GU_171_/C___
__CC__CCAAGG__AAGGGGGG______
15._GU_171_/C___
__CC__CCAAGG__AAGGGGGG______
16._GU_171_/C___
GG____________AAGG__GGAA____
17._GU_171_/C___
GGGGGGGGAAGGGGAAGGCCCCAA____
18._GU_171_/C___
GGGGGGGGAAGGGGAAGGCCCCAA____
19._GU_171_/C___
GGGGGGGGAAGGGGAAGGCCCCAA____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGCCCCGGCCCCGGAAGGCCTTAACCTT
1._GU_171_/C___
GGCCCCGGCCCCGGAAGGCCTTAACCTT
2._GU_171_/C___
GGCCCCGGCCCCGGAAGGCCTTAACCTT
3._GU_171_/C___
GGCCCCGGCCCCGGAAGGCCTTAACCTT
4._GU_171_/C___
GGCCCCGGCCCCGGAAGGCCTTAACCTT
5._GU_171_/C___
GGCCCCGGCCCCGGAAGGCCTTAACCTT
6._GU_171_/C___
GGCCCCGGCCCCGGAAGGCCTTAACCTT
7._GU_171_/C___
______________AAGG____AACC__
8._GU_171_/C___
GGCC__________AAGG______CCTT
9._GU_171_/C___
GGCC__________AAGG______CCTT
10._GU_171_/C___
GGCC__________AAGG______CCTT
11._GU_171_/C___
GGCC__________AAGG______CCTT
12._GU_171_/C___
GGCC__________AAGG______CCTT
13._GU_171_/C___
GGCC__________AAGG______CCTT
14._GU_171_/C___
GGCC__________AAGG______CCTT
15._GU_171_/C___
AACC__________AAGG______CCTT
16._GU_171_/C___
AA______________GG____AA____
17._GU_171_/C___
__GGCCGGCCCC__AACCGGTTAAGGAA
18._GU_171_/C___
__GGCCGGCCCC__AACCGGTTAAGGAA
19._GU_171_/C___
__GGCCGGCCCC__AACCGGTTAAGGAA
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GU_171_/C___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GU_171_/C___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GU_171_/C___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GU_171_/C___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
5._GU_171_/C___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
6._GU_171_/C___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
7._GU_171_/C___
____AGCCCCTT______X_XX_XX_XX_XX_X
8._GU_171_/C___
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
9._GU_171_/C___
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
10._GU_171_/C___
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
11._GU_171_/C___
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
12._GU_171_/C___
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
13._GU_171_/C___
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
14._GU_171_/C___
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
15._GU_171_/C___
CC__AG__CCTTTT____X_XX_XX_XX_XX_X
16._GU_171_/C___
CC____CC__TT______X_XX_XX_XX_XX_X
17._GU_171_/C___
__GG____GGAAAATTGGX_XX_XX_XX_XX_X
18._GU_171_/C___
__GG____GGAAAATTGGX_XX_XX_XX_XX_X
19._GU_171_/C___
__GG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: GU_171_/C GC-01-094-5-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

1._GU_171_/C GC-01-094-5-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._GU_171_/C GC-01-094-5-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

3._GU_171_/C GC-01-094-5-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._GU_171_/C GC-01-094-5-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._GU_171_/C GC-01-094-5-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

6._GU_171_/C GC-01-094-5-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._GU_171_/C RUQ_195

identical
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 2 > FP
 Dapeng Zhang, 2016

9._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 7
 Dapeng Zhang, 2016

10._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 9
 Dapeng Zhang, 2016

11._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 12
 Dapeng Zhang, 2016

12._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 14
 Dapeng Zhang, 2016

13._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 1 > FP
 Dapeng Zhang, 2016

14._GU_171_/C

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1511 10 > F
 Dapeng Zhang, 2016

15._GU_171_/C RUQ_195

94.9 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._GU_171_/C RUQ_195

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

17._GU_171_/C GC-01-94-5-11

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

18._GU_171_/C GC-01-94-5-11

46.8 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._GU_171_/C RUQ_195

46.8 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240