SNP Profiles of POUND 2 /A   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCTT
1._GC-01-093-5-10
AAAATTAAGGGGCCCCCCCCGGTTCCTT
2._GC-01-093-5-10
AAAATTAAGGGGCCCCCCCCGGTTCCTT
3._GC-01-093-5-10
AAAATTAAGGGGCCCCCCCCGGTTCCTT
4._GC-01-093-5-10
AAAATTAAGGGGCCCCCCCCGGTTCCTT
5._GC-01-093-5-10
AAAATTAAGGGGCCCCCCCCGGTTCCTT
6._POUND_2_/A
AAAATTAA________CCCCGG__CC__
7._POUND_2_/A
AAAATTAA________CCCCGG__CC__
8._POUND_2_/A
AAAATTAA________CCCCGG__CC__
9._POUND_2_/A
AAAATTAA________CCCCGG__CC__
10._POUND_2_/A
AAAATTAA________CCCCGG__CC__
11._POUND_2_/A
AAAATTAA________CCCCGG__CC__
12._POUND_2_/A
AAAATTAA________CCCCGG__CC__
13._GC-01-093-5-10
AA__CCCCGGGGCTCCCCCCGGTTCCTT
14._GC-01-093-5-10
AA__CCCCGGGGCTCCCCCCGGTTCCTT
15._POUND_2_/A
AA__CCCC________CCCCGG__CC__
16._POUND_2_/A
AA__CCCC________CCCCGG__CC__
17._GC-01-93-5-10
AAAA__AAGGGG__GGGG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAGGGCCGGCCAATTGGTTAACCGG
1._GC-01-093-5-10
AAAAAGGGCCGGCCAATTGGTTAACCGG
2._GC-01-093-5-10
AAAAAGGGCCGGCCAATTGGTTAACCGG
3._GC-01-093-5-10
AAAAAGGGCCGGCCAATTGGTTAACCGG
4._GC-01-093-5-10
AAAAAGGGCCGGCCAATTGGTTAACCGG
5._GC-01-093-5-10
AAAAAGGGCCGGCCAATTGGTTAACCGG
6._POUND_2_/A
____AG____GG________TTAA__GG
7._POUND_2_/A
____AG____GG________TTAA__GG
8._POUND_2_/A
____AG____GG________TTAA__GG
9._POUND_2_/A
____AG____GG________TTAA__GG
10._POUND_2_/A
____AG____GG________TTAA__GG
11._POUND_2_/A
____AG____GG________TTAA__GG
12._POUND_2_/A
____AG____GG________TTAA__GG
13._GC-01-093-5-10
AACCGGGGCCGGTTAATTGGAAAACCGG
14._GC-01-093-5-10
AACCGGGGCCGGTTAATTGGAAAACCGG
15._POUND_2_/A
____GG____GG________AAAA__GG
16._POUND_2_/A
____GG____GG________AAAA__GG
17._GC-01-93-5-10
TTAAAGCC__GGGGAAAAGGTTAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGGGGGCCGGGGGGTTAACCGGCC
1._GC-01-093-5-10
AATTGGGGGGCCGGGGGGTTAACCGGCC
2._GC-01-093-5-10
AATTGGGGGGCCGGGGGGTTAACCGGCC
3._GC-01-093-5-10
AATTGGGGGGCCGGGGGGTTAACCGGCC
4._GC-01-093-5-10
AATTGGGGGGCCGGGGGGTTAACCGGCC
5._GC-01-093-5-10
AATTGGGGGGCCGGGGGGTTAACCGGCC
6._POUND_2_/A
AA______GG__GGGG____AA______
7._POUND_2_/A
AA______GG__GGGG____AA______
8._POUND_2_/A
AA______GG__GGGG____AA______
9._POUND_2_/A
AA______GG__GGGG____AA______
10._POUND_2_/A
AA______GG__GGGG____AA______
11._POUND_2_/A
AA______GG__GGGG____AA______
12._POUND_2_/A
AA______GG__GGGG____AA______
13._GC-01-093-5-10
AATTTTGGCCCCGGTTGGGGGGCCGGCC
14._GC-01-093-5-10
AATTTTGGCCCCGGTTGGGGGGCCGGCC
15._POUND_2_/A
AA______CC__GGTT____GG______
16._POUND_2_/A
AA______CC__GGTT____GG______
17._GC-01-93-5-10
AAAACCGGGGCCGGCCCCAAAAGGGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGGGGGTTCCCC
1._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGGGTTCCCC
2._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGGGTTCCCC
3._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGGGTTCCCC
4._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGGGTTCCCC
5._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGGGTTCCCC
6._POUND_2_/A
____TT__________________CCCC
7._POUND_2_/A
____TT__________________CCCC
8._POUND_2_/A
____TT__________________CCCC
9._POUND_2_/A
____TT__________________CCCC
10._POUND_2_/A
____TT__________________CCCC
11._POUND_2_/A
____TT__________________CCCC
12._POUND_2_/A
____TT__________________CCCC
13._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGTTTTTTCC
14._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGTTTTTT__
15._POUND_2_/A
____TT__________________TTCC
16._POUND_2_/A
____TT__________________TT__
17._GC-01-93-5-10
CC__AA__GGAAGG__GGGGCCAAGGGG
 5758596061626364656667686970
_Input profile
TTGGCCCCTTAAGGGGCCAAGGGGGGTT
1._GC-01-093-5-10
TTGGCCCCTTAAGGGGCCAAGGGGGGTT
2._GC-01-093-5-10
TTGGCCCCTTAAGGGGCCAAGGGGGGTT
3._GC-01-093-5-10
TTGGCCCCTTAAGGGGCCAAGGGGGGTT
4._GC-01-093-5-10
TTGGCCCCTTAAGGGGCCAAGGGGGGTT
5._GC-01-093-5-10
TTGGCCCCTTAAGGGGCCAAGGGGGG__
6._POUND_2_/A
____CC__TTAAGG__CCAAGGGG____
7._POUND_2_/A
____CC__TTAAGG__CCAAGGGG____
8._POUND_2_/A
____CC__TTAAGG__CCAAGGGG____
9._POUND_2_/A
____CC__TTAAGG__CCAAGGGG____
10._POUND_2_/A
____CC__TTAAGG__CCAAGGGG____
11._POUND_2_/A
____CC__TTAAGG__CCAAGGGG____
12._POUND_2_/A
________TTAAGG__CCAAGGGG____
13._GC-01-093-5-10
TTGGCCCCCCAAGGGGAAGGGGGGAACC
14._GC-01-093-5-10
TTGGCCCCCCAAGGGGAAGGGGGGAACC
15._POUND_2_/A
____CC__CCAAGG__AAGGGGGG____
16._POUND_2_/A
____CC__CCAAGG__AAGGGGGG____
17._GC-01-93-5-10
AAGGGGGGAAAAGGGGCCAACCCCGG__
 7172737475767778798081828384
_Input profile
CCAACCCCAACCAAAACCCCCCAACCCC
1._GC-01-093-5-10
CCAACCCCAACCAAAACCCCCCAACCCC
2._GC-01-093-5-10
CCAACCCCAACCAAAACCCCCCAACCCC
3._GC-01-093-5-10
CCAACCCCAACCAAAACCCCCCAACCCC
4._GC-01-093-5-10
CCAACCCCAACCAAAACCCCCCAACCCC
5._GC-01-093-5-10
CCAACCCCAACCAAAACCCCCCAACCCC
6._POUND_2_/A
__AACC__________CCCC______CC
7._POUND_2_/A
__AACC__________CCCC______CC
8._POUND_2_/A
__AACC__________CCCC______CC
9._POUND_2_/A
__AACC__________CCCC______CC
10._POUND_2_/A
__AACC__________CCCC______CC
11._POUND_2_/A
__AACC__________CCCC______CC
12._POUND_2_/A
__AACC__________CCCC______CC
13._GC-01-093-5-10
CCGGCCAAGGCCCCGGAAGGCCTTAACC
14._GC-01-093-5-10
CCGGCCAAGGCCCCGGAAGGCCTTAACC
15._POUND_2_/A
__GGCC__________AAGG______CC
16._POUND_2_/A
__GGCC__________AAGG______CC
17._GC-01-93-5-10
____GGCCAACCAA__CCGGGGAACCGG
 85868788899091929394    
_Input profile
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
1._GC-01-093-5-10
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
2._GC-01-093-5-10
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
3._GC-01-093-5-10
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
4._GC-01-093-5-10
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
5._GC-01-093-5-10
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
6._POUND_2_/A
TTCC__AA__CCTTTT____X_XX_XX_XX_X
7._POUND_2_/A
TTCC__AA__CCTTTT____X_XX_XX_XX_X
8._POUND_2_/A
TTCC__AA__CCTTTT____X_XX_XX_XX_X
9._POUND_2_/A
TTCC__AA__CCTTTT____X_XX_XX_XX_X
10._POUND_2_/A
TTCC__AA__CCTTTT____X_XX_XX_XX_X
11._POUND_2_/A
TTCC__AA__CCTTTT____X_XX_XX_XX_X
12._POUND_2_/A
TT____AA__CCTTTT____X_XX_XX_XX_X
13._GC-01-093-5-10
CCCCCCGGCCCCTTTTAAGGX_XX_XX_XX_X
14._GC-01-093-5-10
CCCCCCGGCCCCTTTTAAGGX_XX_XX_XX_X
15._POUND_2_/A
CCCC__GG__CCTTTT____X_XX_XX_XX_X
16._POUND_2_/A
CCCC__GG__CCTTTT____X_XX_XX_XX_X
17._GC-01-93-5-10
AA__AA____GGAAAAAAGGX_XX_XX_XX_X

Input profile: POUND_2_/A GC-01-093-5-10

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

1._POUND_2_/A GC-01-093-5-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

2._POUND_2_/A GC-01-093-5-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

3._POUND_2_/A GC-01-093-5-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

4._POUND_2_/A GC-01-093-5-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._POUND_2_/A GC-01-093-5-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._POUND_2_/A

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

7._POUND_2_/A

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

8._POUND_2_/A

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

9._POUND_2_/A

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

10._POUND_2_/A

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

11._POUND_2_/A

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._POUND_2_/A

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

13._POUND_2_/A GC-01-093-5-10

66.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

14._POUND_2_/A GC-01-093-5-10

66.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

15._POUND_2_/A

60.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 13
 Dapeng Zhang, 2016

16._POUND_2_/A

59.2 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 5 > FP
 Dapeng Zhang, 2016

17._POUND_2_/A GC-01-93-5-10

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 10, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240