SNP Profiles of POUND 2 /A   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTAAGGGGCCCCCCCCGGTTCCTT
1._GC-01-093-5-10
AAAATTAAGGGGCCCCCCCCGGTTCCTT
2._GC-01-093-5-10
AAAATTAAGGGGCCCCCCCCGGTTCCTT
3._GC-01-093-5-10
AAAATTAAGGGGCCCCCCCCGGTTCCTT
4._GC-01-093-5-10
AAAATTAAGGGGCCCCCCCCGGTTCCTT
5._GC-01-093-5-10
AAAATTAAGGGGCCCCCCCCGGTTCCTT
6._POUND_2_/A
AAAATTAA________CCCCGG__CC__
7._POUND_2_/A
AAAATTAA________CCCCGG__CC__
8._POUND_2_/A
AAAATTAA________CCCCGG__CC__
9._POUND_2_/A
AAAATTAA________CCCCGG__CC__
10._POUND_2_/A
AAAATTAA________CCCCGG__CC__
11._POUND_2_/A
AAAATTAA________CCCCGG__CC__
12._POUND_2_/A
AAAATTAA________CCCCGG__CC__
13._GC-01-093-5-10
AA__CCCCGGGGCTCCCCCCGGTTCCTT
14._GC-01-093-5-10
AA__CCCCGGGGCTCCCCCCGGTTCCTT
15._POUND_2_/A
AA__CCCC________CCCCGG__CC__
16._POUND_2_/A
AA__CCCC________CCCCGG__CC__
17._GC-01-93-5-10
AAAA__AAGGGG__GGGG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAGGGCCGGCCAATTGGTTAACCGG
1._GC-01-093-5-10
AAAAAGGGCCGGCCAATTGGTTAACCGG
2._GC-01-093-5-10
AAAAAGGGCCGGCCAATTGGTTAACCGG
3._GC-01-093-5-10
AAAAAGGGCCGGCCAATTGGTTAACCGG
4._GC-01-093-5-10
AAAAAGGGCCGGCCAATTGGTTAACCGG
5._GC-01-093-5-10
AAAAAGGGCCGGCCAATTGGTTAACCGG
6._POUND_2_/A
____AG____GG________TTAA__GG
7._POUND_2_/A
____AG____GG________TTAA__GG
8._POUND_2_/A
____AG____GG________TTAA__GG
9._POUND_2_/A
____AG____GG________TTAA__GG
10._POUND_2_/A
____AG____GG________TTAA__GG
11._POUND_2_/A
____AG____GG________TTAA__GG
12._POUND_2_/A
____AG____GG________TTAA__GG
13._GC-01-093-5-10
AACCGGGGCCGGTTAATTGGAAAACCGG
14._GC-01-093-5-10
AACCGGGGCCGGTTAATTGGAAAACCGG
15._POUND_2_/A
____GG____GG________AAAA__GG
16._POUND_2_/A
____GG____GG________AAAA__GG
17._GC-01-93-5-10
TTAAAGCC__GGGGAAAAGGTTAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGGGGGCCGGGGGGTTAACCGGCC
1._GC-01-093-5-10
AATTGGGGGGCCGGGGGGTTAACCGGCC
2._GC-01-093-5-10
AATTGGGGGGCCGGGGGGTTAACCGGCC
3._GC-01-093-5-10
AATTGGGGGGCCGGGGGGTTAACCGGCC
4._GC-01-093-5-10
AATTGGGGGGCCGGGGGGTTAACCGGCC
5._GC-01-093-5-10
AATTGGGGGGCCGGGGGGTTAACCGGCC
6._POUND_2_/A
AA______GG__GGGG____AA______
7._POUND_2_/A
AA______GG__GGGG____AA______
8._POUND_2_/A
AA______GG__GGGG____AA______
9._POUND_2_/A
AA______GG__GGGG____AA______
10._POUND_2_/A
AA______GG__GGGG____AA______
11._POUND_2_/A
AA______GG__GGGG____AA______
12._POUND_2_/A
AA______GG__GGGG____AA______
13._GC-01-093-5-10
AATTTTGGCCCCGGTTGGGGGGCCGGCC
14._GC-01-093-5-10
AATTTTGGCCCCGGTTGGGGGGCCGGCC
15._POUND_2_/A
AA______CC__GGTT____GG______
16._POUND_2_/A
AA______CC__GGTT____GG______
17._GC-01-93-5-10
AAAACCGGGGCCGGCCCCAAAAGGGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGGGGGTTCCCC
1._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGGGTTCCCC
2._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGGGTTCCCC
3._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGGGTTCCCC
4._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGGGTTCCCC
5._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGGGTTCCCC
6._POUND_2_/A
____TT__________________CCCC
7._POUND_2_/A
____TT__________________CCCC
8._POUND_2_/A
____TT__________________CCCC
9._POUND_2_/A
____TT__________________CCCC
10._POUND_2_/A
____TT__________________CCCC
11._POUND_2_/A
____TT__________________CCCC
12._POUND_2_/A
____TT__________________CCCC
13._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGTTTTTTCC
14._GC-01-093-5-10
GGTTTTAAGGAACCCCGGGGTTTTTT__
15._POUND_2_/A
____TT__________________TTCC
16._POUND_2_/A
____TT__________________TT__
17._GC-01-93-5-10
CC__AA__GGAAGG__GGGGCCAAGGGG
 5758596061626364656667686970
_Input profile
TTGGCCCCTTAAGGGGCCAAGGGGGGCC
1._GC-01-093-5-10
TTGGCCCCTTAAGGGGCCAAGGGGGGCC
2._GC-01-093-5-10
TTGGCCCCTTAAGGGGCCAAGGGGGGCC
3._GC-01-093-5-10
TTGGCCCCTTAAGGGGCCAAGGGGGGCC
4._GC-01-093-5-10
TTGGCCCCTTAAGGGGCCAAGGGGGGCC
5._GC-01-093-5-10
TTGGCCCCTTAAGGGGCCAAGGGGGGCC
6._POUND_2_/A
____CC__TTAAGG__CCAAGGGG____
7._POUND_2_/A
____CC__TTAAGG__CCAAGGGG____
8._POUND_2_/A
____CC__TTAAGG__CCAAGGGG____
9._POUND_2_/A
____CC__TTAAGG__CCAAGGGG____
10._POUND_2_/A
____CC__TTAAGG__CCAAGGGG____
11._POUND_2_/A
____CC__TTAAGG__CCAAGGGG____
12._POUND_2_/A
________TTAAGG__CCAAGGGG____
13._GC-01-093-5-10
TTGGCCCCCCAAGGGGAAGGGGGGAACC
14._GC-01-093-5-10
TTGGCCCCCCAAGGGGAAGGGGGGAACC
15._POUND_2_/A
____CC__CCAAGG__AAGGGGGG____
16._POUND_2_/A
____CC__CCAAGG__AAGGGGGG____
17._GC-01-93-5-10
AAGGGGGGAAAAGGGGCCAACCCCGG__
 7172737475767778798081828384
_Input profile
AACCCCAACCAAAACCCCCCAACCCCTT
1._GC-01-093-5-10
AACCCCAACCAAAACCCCCCAACCCCTT
2._GC-01-093-5-10
AACCCCAACCAAAACCCCCCAACCCCTT
3._GC-01-093-5-10
AACCCCAACCAAAACCCCCCAACCCCTT
4._GC-01-093-5-10
AACCCCAACCAAAACCCCCCAACCCCTT
5._GC-01-093-5-10
AACCCCAACCAAAACCCCCCAACCCCTT
6._POUND_2_/A
AACC__________CCCC______CCTT
7._POUND_2_/A
AACC__________CCCC______CCTT
8._POUND_2_/A
AACC__________CCCC______CCTT
9._POUND_2_/A
AACC__________CCCC______CCTT
10._POUND_2_/A
AACC__________CCCC______CCTT
11._POUND_2_/A
AACC__________CCCC______CCTT
12._POUND_2_/A
AACC__________CCCC______CCTT
13._GC-01-093-5-10
GGCCAAGGCCCCGGAAGGCCTTAACCCC
14._GC-01-093-5-10
GGCCAAGGCCCCGGAAGGCCTTAACCCC
15._POUND_2_/A
GGCC__________AAGG______CCCC
16._POUND_2_/A
GGCC__________AAGG______CCCC
17._GC-01-93-5-10
__GGCCAACCAA__CCGGGGAACCGGAA
 858687888990919293     
_Input profile
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
1._GC-01-093-5-10
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
2._GC-01-093-5-10
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
3._GC-01-093-5-10
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
4._GC-01-093-5-10
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
5._GC-01-093-5-10
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
6._POUND_2_/A
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._POUND_2_/A
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._POUND_2_/A
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
9._POUND_2_/A
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._POUND_2_/A
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
11._POUND_2_/A
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
12._POUND_2_/A
____AA__CCTTTT____X_XX_XX_XX_XX_X
13._GC-01-093-5-10
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
14._GC-01-093-5-10
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
15._POUND_2_/A
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
16._POUND_2_/A
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
17._GC-01-93-5-10
__AA____GGAAAAAAGGX_XX_XX_XX_XX_X

Input profile: POUND_2_/A GC-01-093-5-10

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._POUND_2_/A GC-01-093-5-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

2._POUND_2_/A GC-01-093-5-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

3._POUND_2_/A GC-01-093-5-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

4._POUND_2_/A GC-01-093-5-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

5._POUND_2_/A GC-01-093-5-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._POUND_2_/A

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

7._POUND_2_/A

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

8._POUND_2_/A

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

9._POUND_2_/A

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

10._POUND_2_/A

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

11._POUND_2_/A

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._POUND_2_/A

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

13._POUND_2_/A GC-01-093-5-10

67.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

14._POUND_2_/A GC-01-093-5-10

67 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

15._POUND_2_/A

60.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 13
 Dapeng Zhang, 2016

16._POUND_2_/A

59.2 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 5 > FP
 Dapeng Zhang, 2016

17._POUND_2_/A GC-01-93-5-10

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 10, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240