SNP Profiles of UF 712 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	AA	AA	TT	TT	CC	CC	AA	TT	TT	TT	TT
1._GC-01-089-5-06	TT	CC	CC	AA	AA	TT	TT	CC	CC	AA	TT	TT	TT	TT
2._GC-01-089-5-06	TT	CC	CC	AA	AA	TT	TT	CC	CC	AA	TT	TT	TT	TT
3._GC-01-089-5-06	TT	CC	CC	AA	AA	TT	TT	CC	CC	AA	TT	TT	TT	TT
4._RUQ_1683	__	CC	CC	__	__	TT	__	CC	__	__	TT	TT	__	__
5._RUQ_1638	__	CC	CC	__	__	TT	__	CC	__	__	TT	TT	__	__
6._UF_712	TT	CC	CC	__	__	__	__	CC	CC	AA	__	TT	__	__
7._UF_712	TT	CC	CC	__	__	__	__	CC	CC	AA	__	TT	__	__
8._UF_712	TT	CC	CC	__	__	__	__	CC	CC	AA	__	TT	__	__
9._UF_712	TT	CC	CC	__	__	__	__	CC	CC	AA	__	TT	__	__
10._RUQ_1638	AT	CC	CC	__	__	__	__	CC	CC	AA	__	TT	__	__
11._RUQ_1638	AT	CC	CC	__	__	__	__	CC	CC	AA	__	TT	__	__
12._UF_712	AT	CC	CC	__	__	__	__	CC	CC	AA	__	TT	__	__
13._RUQ_1683	__	__	__	__	__	TT	__	__	__	__	__	__	__	__
14._UF_712	AT	CC	TT	__	__	__	__	CC	CC	AA	__	TT	__	__
15._RUQ_1683	AT	__	CC	AA	AA	__	AA	GG	__	AA	AA	AA	AA	AA
16._MITC-000350	AT	__	CC	AA	AA	__	AA	GG	__	AA	AA	AA	AA	AA
17._MITC-000039	AT	__	CC	AA	AA	__	AA	GG	__	AA	AA	AA	AA	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	GG	CC	GG	GG	CC	AA	CC	GG	AA	TT	CC	GG
1._GC-01-089-5-06	AA	AA	GG	CC	GG	GG	CC	AA	CC	GG	AA	TT	CC	GG
2._GC-01-089-5-06	AA	AA	GG	CC	GG	GG	CC	AA	CC	GG	AA	TT	CC	GG
3._GC-01-089-5-06	AA	AA	GG	CC	GG	GG	CC	AA	CC	GG	AA	TT	CC	GG
4._RUQ_1683	__	__	__	__	GG	__	__	__	__	GG	__	TT	CC	GG
5._RUQ_1638	__	__	__	__	GG	__	__	__	__	GG	__	TT	CC	GG
6._UF_712	__	__	GG	__	__	GG	__	__	__	__	AA	TT	__	GG
7._UF_712	__	__	GG	__	__	GG	__	__	__	__	AA	TT	__	GG
8._UF_712	__	__	GG	__	__	GG	__	__	__	__	AA	TT	__	GG
9._UF_712	__	__	GG	__	__	GG	__	__	__	__	AA	TT	__	GG
10._RUQ_1638	__	__	GG	__	__	GG	__	__	__	__	AA	TT	__	GG
11._RUQ_1638	__	__	GG	__	__	GG	__	__	__	__	AA	TT	__	GG
12._UF_712	__	__	GG	__	__	__	__	__	__	__	AA	TT	__	GG
13._RUQ_1683	__	__	GG	CC	__	__	__	__	__	__	__	__	__	GG
14._UF_712	__	__	GG	__	__	__	__	__	__	__	AA	TT	__	GG
15._RUQ_1683	AA	AA	GG	GG	__	GG	GG	AA	GG	GG	AA	TT	GG	CC
16._MITC-000350	AA	AA	GG	GG	__	GG	GG	AA	GG	GG	AA	TT	GG	CC
17._MITC-000039	AA	AA	GG	GG	__	GG	GG	AA	GG	GG	AA	TT	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	TT	TT	GG	GG	CC	AA	GG	GG	TT	GG	CC	GG	GG
1._GC-01-089-5-06	TT	TT	TT	GG	GG	CC	AA	GG	GG	TT	GG	CC	GG	GG
2._GC-01-089-5-06	TT	TT	TT	GG	GG	CC	AA	GG	GG	TT	GG	CC	GG	GG
3._GC-01-089-5-06	TT	TT	TT	GG	GG	CC	AA	GG	GG	TT	GG	CC	GG	GG
4._RUQ_1683	__	__	__	GG	GG	CC	AA	GG	__	__	GG	CC	__	__
5._RUQ_1638	__	__	__	GG	GG	CC	AA	GG	__	__	GG	CC	__	__
6._UF_712	TT	__	__	__	GG	__	AA	GG	__	__	GG	__	__	__
7._UF_712	TT	__	__	__	GG	__	AA	GG	__	__	GG	__	__	__
8._UF_712	TT	__	__	__	GG	__	AA	GG	__	__	GG	__	__	__
9._UF_712	TT	__	__	__	GG	__	AA	GG	__	__	GG	__	__	__
10._RUQ_1638	TT	__	__	__	GG	__	AA	GG	__	__	GG	__	__	__
11._RUQ_1638	TT	__	__	__	GG	__	AA	GG	__	__	GG	__	__	__
12._UF_712	TT	__	__	__	GG	__	AA	GG	__	__	GG	__	__	__
13._RUQ_1683	__	__	__	__	GG	__	AA	__	__	__	__	CC	__	__
14._UF_712	TT	__	__	__	GG	__	AA	GG	__	__	GG	__	__	__
15._RUQ_1683	TT	AA	AA	GG	GG	CC	AA	CC	CC	AA	GG	GG	GG	CC
16._MITC-000350	TT	AA	AA	GG	GG	CC	AA	CC	CC	AA	GG	GG	GG	CC
17._MITC-000039	TT	AA	AA	GG	GG	CC	AA	CC	CC	AA	GG	GG	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	TT	GG	AA	AA	CC	AA	GG	AA	TT	TT	CC	TT
1._GC-01-089-5-06	GG	TT	TT	GG	AA	AA	CC	AA	GG	AA	TT	TT	CC	TT
2._GC-01-089-5-06	GG	TT	TT	GG	AA	AA	CC	AA	GG	AA	TT	TT	CC	TT
3._GC-01-089-5-06	GG	TT	TT	GG	AA	AA	CC	AA	GG	AA	TT	TT	CC	TT
4._RUQ_1683	GG	TT	__	__	AA	__	__	__	__	__	__	TT	__	TT
5._RUQ_1638	GG	TT	__	__	AA	__	__	__	__	__	__	TT	__	TT
6._UF_712	__	__	TT	__	__	__	__	__	__	__	__	TT	CC	__
7._UF_712	__	__	TT	__	__	__	__	__	__	__	__	TT	CC	__
8._UF_712	__	__	TT	__	__	__	__	__	__	__	__	TT	CC	__
9._UF_712	__	__	TT	__	__	__	__	__	__	__	__	TT	CC	__
10._RUQ_1638	__	__	TT	__	__	__	__	__	__	__	__	TT	CC	__
11._RUQ_1638	__	__	TT	__	__	__	__	__	__	__	__	TT	CC	__
12._UF_712	__	__	TT	__	__	__	__	__	__	__	__	TT	CC	__
13._RUQ_1683	__	__	__	__	AA	__	__	__	__	__	__	__	__	__
14._UF_712	__	__	TT	__	__	__	__	__	__	__	__	TT	CC	__
15._RUQ_1683	CC	__	AA	__	AA	AA	GG	__	GG	AA	AA	AA	GG	AA
16._MITC-000350	CC	__	AA	__	AA	AA	GG	__	GG	AA	AA	AA	GG	AA
17._MITC-000039	CC	__	AA	__	AA	AA	GG	__	GG	AA	AA	AA	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	CC	CC	TT	CC	CC	GG	CC	AA	GG	GG	AA	TT	CC
1._GC-01-089-5-06	GG	CC	CC	TT	CC	CC	GG	CC	AA	GG	GG	AA	TT	CC
2._GC-01-089-5-06	GG	CC	CC	TT	CC	CC	GG	CC	AA	GG	GG	AA	TT	CC
3._GC-01-089-5-06	GG	CC	CC	TT	CC	CC	GG	CC	AA	GG	GG	AA	TT	CC
4._RUQ_1683	__	CC	CC	TT	CC	__	GG	CC	AA	GG	GG	AA	__	__
5._RUQ_1638	__	CC	CC	TT	CC	__	GG	CC	AA	GG	GG	AA	__	__
6._UF_712	__	CC	__	TT	CC	CC	__	CC	AA	GG	GG	__	__	__
7._UF_712	__	CC	__	TT	CC	CC	__	CC	AA	GG	GG	__	__	__
8._UF_712	__	CC	__	TT	CC	CC	__	CC	AA	GG	GG	__	__	__
9._UF_712	__	CC	__	TT	CC	CC	__	CC	AA	GG	GG	__	__	__
10._RUQ_1638	__	CC	__	TT	CC	CC	__	CC	AA	GG	GG	__	__	__
11._RUQ_1638	__	CC	__	TT	CC	CC	__	CC	AA	GG	GG	__	__	__
12._UF_712	__	CC	__	TT	CC	CC	__	CC	AA	GG	GG	__	__	__
13._RUQ_1683	GG	__	__	__	__	__	__	CC	AA	__	GG	AA	__	__
14._UF_712	__	CC	__	TT	CC	CC	__	CC	__	GG	GG	__	__	__
15._RUQ_1683	GG	GG	GG	AA	CC	CC	GG	CC	AA	CC	CC	AA	__	__
16._MITC-000350	GG	GG	GG	AA	CC	CC	GG	CC	AA	CC	CC	AA	__	__
17._MITC-000039	GG	GG	GG	AA	CC	CC	GG	CC	AA	CC	CC	AA	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AA	CC	CC	GG	AA	AA	AA	AA	CC	CC	AA	CC	CT	TT
1._GC-01-089-5-06	AA	CC	CC	GG	AA	AA	AA	AA	CC	CC	AA	CC	CT	TT
2._GC-01-089-5-06	AA	CC	CC	GG	AA	AA	AA	AA	CC	CC	AA	CC	CT	TT
3._GC-01-089-5-06	AA	CC	CC	GG	AA	AA	AA	AA	__	CC	AA	CC	CT	TT
4._RUQ_1683	__	__	__	__	__	__	__	AA	CC	__	__	CC	CT	__
5._RUQ_1638	__	__	__	__	__	__	__	AA	CC	__	__	CC	CT	__
6._UF_712	AA	CC	__	__	__	__	__	AA	CC	__	__	__	CT	TT
7._UF_712	AA	CC	__	__	__	__	__	AA	CC	__	__	__	CT	TT
8._UF_712	AA	CC	__	__	__	__	__	AA	CC	__	__	__	CT	TT
9._UF_712	AA	CC	__	__	__	__	__	AA	__	__	__	__	CT	TT
10._RUQ_1638	GG	CC	__	__	__	__	__	AA	CC	__	__	__	CT	TT
11._RUQ_1638	GG	CC	__	__	__	__	__	AA	CC	__	__	__	CT	TT
12._UF_712	GG	CC	__	__	__	__	__	AA	CC	__	__	__	CT	TT
13._RUQ_1683	GG	__	__	__	__	__	__	AA	CC	__	__	CC	__	__
14._UF_712	GG	CC	__	__	__	__	__	AA	CC	__	__	__	CT	TT
15._RUQ_1683	__	GG	CC	GG	AA	AA	__	AA	GG	GG	AA	CC	AG	AA
16._MITC-000350	__	GG	CC	GG	AA	AA	__	AA	GG	GG	AA	CC	AG	AA
17._MITC-000039	__	GG	CC	GG	AA	AA	__	AA	GG	GG	AA	CC	AG	AA

	85	86	87	88	89	90	91	92	93
_Input profile	CC	TT	GG	CC	CC	GG	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
1._GC-01-089-5-06	CC	TT	GG	CC	CC	GG	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
2._GC-01-089-5-06	CC	TT	GG	CC	CC	GG	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
3._GC-01-089-5-06	CC	TT	GG	CC	CC	GG	CC	AA	GG	X_X	X_X	X_X	X_X	X_X
4._RUQ_1683	__	__	GG	CC	CC	GG	__	__	__	X_X	X_X	X_X	X_X	X_X
5._RUQ_1638	__	__	GG	CC	CC	GG	__	__	__	X_X	X_X	X_X	X_X	X_X
6._UF_712	CC	__	GG	__	CC	GG	CC	__	__	X_X	X_X	X_X	X_X	X_X
7._UF_712	CC	__	GG	__	CC	GG	CC	__	__	X_X	X_X	X_X	X_X	X_X
8._UF_712	CC	__	GG	__	CC	GG	CC	__	__	X_X	X_X	X_X	X_X	X_X
9._UF_712	CC	__	GG	__	CC	GG	CC	__	__	X_X	X_X	X_X	X_X	X_X
10._RUQ_1638	CC	__	GG	__	CC	GG	CC	__	__	X_X	X_X	X_X	X_X	X_X
11._RUQ_1638	CC	__	GG	__	CC	GG	CC	__	__	X_X	X_X	X_X	X_X	X_X
12._UF_712	CC	__	GG	__	CC	GG	CC	__	__	X_X	X_X	X_X	X_X	X_X
13._RUQ_1683	CC	__	__	CC	__	GG	__	__	__	X_X	X_X	X_X	X_X	X_X
14._UF_712	CC	__	GG	__	CC	GG	CC	__	__	X_X	X_X	X_X	X_X	X_X
15._RUQ_1683	__	AA	__	__	GG	CC	GG	TT	GG	X_X	X_X	X_X	X_X	X_X
16._MITC-000350	__	AA	__	__	GG	CC	GG	TT	GG	X_X	X_X	X_X	X_X	X_X
17._MITC-000039	__	AA	__	__	GG	CC	GG	TT	GG	X_X	X_X	X_X	X_X	X_X

Input profile: UF_712 GC-01-089-5-06

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

1._UF_712 GC-01-089-5-06

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

2._UF_712 GC-01-089-5-06

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

3._UF_712 GC-01-089-5-06

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._UF_712 RUQ_1683

identical
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._UF_712 RUQ_1638

identical
41 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._UF_712

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1506 1

Dapeng Zhang, 2016

7._UF_712

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1506 2

Dapeng Zhang, 2016

8._UF_712

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1506 4

Dapeng Zhang, 2016

9._UF_712

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1506 3

Dapeng Zhang, 2016

10._UF_712 RUQ_1638

96.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._UF_712 RUQ_1638

96.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._UF_712

96.1 %
38 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

13._UF_712 RUQ_1683

95 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

14._UF_712

93.2 %
37 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 6 Row 39 34_36

Dapeng Zhang, 2016

15._UF_712 RUQ_1683

48.7 %
79 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._UF_712 MITC-000350

48.7 %
79 shared markers

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USDA-SHRS, United States of America

17._UF_712 MITC-000039

48.7 %
79 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP860	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240