SNP Profiles of GU 147 /H   View Data

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 Key

 1234567891011121314
_Input profile
AACCAAGGGGCTCCCCCCGGTTCCTTAA
1._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
2._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
3._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
4._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
5._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
6._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
7._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
8._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
9._GU_147_/H
AACCAA________CCCCGG__CC____
10._GU_147_/H
AACCAA________CCCCGG__CC____
11._GU_147_/H
AACCAA________CCCCGG__CC____
12._GU_147_/H
AACCAA________CCCCGG__CC____
13._GU_147_/H
AACCAA________CCCCGG__CC____
14._GU_147_/H
AACCAA________CCCCGG__CC____
15._GU_147_/H
AACCAA________CCCCGG__CC____
16._GU_147_/H
AACCAA________CCCCGG__CC____
17._GU_147_/H
AACCAA________CCCCGG__CC____
18._RUQ_222
__CCAA____CC__CC____TTCC____
19._RUQ_222
AACCAA________CCCCGG__CC____
20._RUQ_222
____AA____CC________________
21._GC-01-80-4-16
AA__AAGGGG__GGGG__GGAAGGAATT
22._RUQ_222
AA__CCGGGG__GGGG__GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGCTAATTGGATAACCGGAA
1._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
2._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
3._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
4._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
5._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
6._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
7._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
8._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
9._GU_147_/H
__GG____GG________ATAA__GGAA
10._GU_147_/H
__GG____GG________ATAA__GGAA
11._GU_147_/H
__GG____GG________ATAA__GGAA
12._GU_147_/H
__GG____GG________ATAA__GGAA
13._GU_147_/H
__GG____GG________ATAA__GGAA
14._GU_147_/H
__GG____GG________ATAA__GGAA
15._GU_147_/H
__GG____GG________ATAA__GGAA
16._GU_147_/H
__GG____GG________ATAA__GGAA
17._GU_147_/H
__GG____GG________ATAA__GGAA
18._RUQ_222
______CC________GG__AACCGG__
19._RUQ_222
__GG____GG________ATAA__GGAA
20._RUQ_222
__GGCT__________________GG__
21._GC-01-80-4-16
CCGGCC__GGAGGGAAGGATAAGGCCAA
22._RUQ_222
CCGGCC__GGAAAGAAGGATAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
8._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
9._GU_147_/H
______CC__GGTT____GG________
10._GU_147_/H
______CC__GGTT____GG________
11._GU_147_/H
______CC__GGTT____GG________
12._GU_147_/H
______CC__GGTT____GG________
13._GU_147_/H
______CC__GGTT____GG________
14._GU_147_/H
______CC__GGTT____GG________
15._GU_147_/H
______CC__GGTT____GG________
16._GU_147_/H
______CC__GGTT____GG________
17._GU_147_/H
______CC__GGTT____GG________
18._RUQ_222
____GGCCCCGGTT____GGCC____GG
19._RUQ_222
______CC__GGTT____GG________
20._RUQ_222
______CC__GG________CC______
21._GC-01-80-4-16
AAAAGGCCCCGGAA__CCGGGGGGGGCC
22._RUQ_222
AAAAGGCCCCAGAACCACAGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GU_147_/H
__TT__________________TTCC__
10._GU_147_/H
__TT__________________TTCC__
11._GU_147_/H
__TT__________________TTCC__
12._GU_147_/H
__TT__________________TTCC__
13._GU_147_/H
__TT__________________TTCC__
14._GU_147_/H
__TT__________________TTCC__
15._GU_147_/H
__TT__________________TTCC__
16._GU_147_/H
__TT__________________TTCC__
17._GU_147_/H
__TT__________________TTCC__
18._RUQ_222
TT____GG____________TTTT__TT
19._RUQ_222
__TT__________________TTCC__
20._RUQ_222
______GG____________________
21._GC-01-80-4-16
__AA__GGAAGG__GGGGAAAAAAGGAA
22._RUQ_222
__AA__GGAAGG__GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GC-01-080-4-16
GGCCCCCCAAGGGGAAGGGGGGAACCCC
8._GC-01-080-4-16
GGCCCCCCAAGGGG__GGGGGGAACCCC
9._GU_147_/H
__CC__CCAAGG__AAGGGGGG______
10._GU_147_/H
__CC__CCAAGG__AAGGGGGG______
11._GU_147_/H
__CC__CCAAGG__AAGGGGGG______
12._GU_147_/H
__CC__CCAAGG__AAGGGGGG______
13._GU_147_/H
__CC__CCAAGG__AAGGGGGG______
14._GU_147_/H
__CC__CCAAGG__AAGGGGGG______
15._GU_147_/H
__CC__CCAAGG__AAGGGGGG______
16._GU_147_/H
__CC__CCAAGG__AAGGGGGG______
17._GU_147_/H
__CC__CCAAGG____GGGGGG______
18._RUQ_222
__CCCCCCAA__GGAAGGGGGGAA____
19._RUQ_222
__CC__CCAAGG__AAGGGGGG______
20._RUQ_222
GG____________AAGG__GGAA____
21._GC-01-80-4-16
GGGGGGGGAAGGGGAAGGCCCCAA____
22._RUQ_222
GGGGGGGGAAGGGGAAGGCCCCAA____
 7172737475767778798081828384
_Input profile
GGCCAAGGCCCCGGAACCCCTTAACTCC
1._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
2._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
3._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
4._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
5._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
6._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
7._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
8._GC-01-080-4-16
GGCCAAGGCCCCGGAACCCCTTAACTCC
9._GU_147_/H
GGCC__________AACC______CTCC
10._GU_147_/H
GGCC__________AACC______CTCC
11._GU_147_/H
GGCC__________AACC______CTCC
12._GU_147_/H
GGCC__________AACC______CTCC
13._GU_147_/H
GGCC__________AACC______CTCC
14._GU_147_/H
GGCC__________AACC______CTCC
15._GU_147_/H
GGCC__________AACC______CTCC
16._GU_147_/H
GGCC__________AACC______CTCC
17._GU_147_/H
GGCC__________AACC______CTCC
18._RUQ_222
______________AACC____AACT__
19._RUQ_222
AACC__________AACC______CTCC
20._RUQ_222
AA____________AACC____AA____
21._GC-01-80-4-16
__GGAAGGCCCC__AAGGGGTTAAAGGG
22._RUQ_222
__GGAAAACCCC__AACCGGTTAAGGAG
 858687888990919293     
_Input profile
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
8._GC-01-080-4-16
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
9._GU_147_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
10._GU_147_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
11._GU_147_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
12._GU_147_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
13._GU_147_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
14._GU_147_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
15._GU_147_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
16._GU_147_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
17._GU_147_/H
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
18._RUQ_222
____GGCCCCTT______X_XX_XX_XX_XX_X
19._RUQ_222
CC__GG__CCTTTT____X_XX_XX_XX_XX_X
20._RUQ_222
CC____CC__TT______X_XX_XX_XX_XX_X
21._GC-01-80-4-16
__GG____GGAAAATTGGX_XX_XX_XX_XX_X
22._RUQ_222
__GG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: GU_147_/H GC-01-080-4-16

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

1._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

2._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

6._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._GU_147_/H GC-01-080-4-16

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

8._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

10._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

12._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

13._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

14._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

15._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

16._GU_147_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

17._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

18._GU_147_/H RUQ_222

98.8 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._GU_147_/H RUQ_222

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._GU_147_/H RUQ_222

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._GU_147_/H GC-01-80-4-16

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

22._GU_147_/H RUQ_222

44.9 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240