SNP Profiles of GU 147 /H   View Data

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 Key

 1234567891011121314
_Input profile
AACCAAGGGGCTCCCCCCGGTTCCTTAA
1._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
2._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
3._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
4._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
5._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
6._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
7._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
8._GC-01-080-4-16
AACCAAGGGGCTCCCCCCGGTTCCTTAA
9._GU_147_/H
AACCAA________CCCCGG__CC____
10._GU_147_/H
AACCAA________CCCCGG__CC____
11._GU_147_/H
AACCAA________CCCCGG__CC____
12._GU_147_/H
AACCAA________CCCCGG__CC____
13._GU_147_/H
AACCAA________CCCCGG__CC____
14._GU_147_/H
AACCAA________CCCCGG__CC____
15._GU_147_/H
AACCAA________CCCCGG__CC____
16._GU_147_/H
AACCAA________CCCCGG__CC____
17._GU_147_/H
AACCAA________CCCCGG__CC____
18._RUQ_222
__CCAA____CC__CC____TTCC____
19._RUQ_222
AACCAA________CCCCGG__CC____
20._RUQ_222
____AA____CC________________
21._GC-01-80-4-16
AA__AAGGGG__GGGG__GGAAGGAATT
22._RUQ_222
AA__CCGGGG__GGGG__GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGCTAATTGGATAACCGGAA
1._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
2._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
3._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
4._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
5._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
6._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
7._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
8._GC-01-080-4-16
CCGGGGCCGGCTAATTGGATAACCGGAA
9._GU_147_/H
__GG____GG________ATAA__GGAA
10._GU_147_/H
__GG____GG________ATAA__GGAA
11._GU_147_/H
__GG____GG________ATAA__GGAA
12._GU_147_/H
__GG____GG________ATAA__GGAA
13._GU_147_/H
__GG____GG________ATAA__GGAA
14._GU_147_/H
__GG____GG________ATAA__GGAA
15._GU_147_/H
__GG____GG________ATAA__GGAA
16._GU_147_/H
__GG____GG________ATAA__GGAA
17._GU_147_/H
__GG____GG________ATAA__GGAA
18._RUQ_222
______CC________GG__AACCGG__
19._RUQ_222
__GG____GG________ATAA__GGAA
20._RUQ_222
__GGCT__________________GG__
21._GC-01-80-4-16
CCGGCC__GGAGGGAAGGATAAGGCCAA
22._RUQ_222
CCGGCC__GGAAAGAAGGATAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
8._GC-01-080-4-16
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
9._GU_147_/H
______CC__GGTT____GG________
10._GU_147_/H
______CC__GGTT____GG________
11._GU_147_/H
______CC__GGTT____GG________
12._GU_147_/H
______CC__GGTT____GG________
13._GU_147_/H
______CC__GGTT____GG________
14._GU_147_/H
______CC__GGTT____GG________
15._GU_147_/H
______CC__GGTT____GG________
16._GU_147_/H
______CC__GGTT____GG________
17._GU_147_/H
______CC__GGTT____GG________
18._RUQ_222
____GGCCCCGGTT____GGCC____GG
19._RUQ_222
______CC__GGTT____GG________
20._RUQ_222
______CC__GG________CC______
21._GC-01-80-4-16
AAAAGGCCCCGGAA__CCGGGGGGGGCC
22._RUQ_222
AAAAGGCCCCAGAACCACAGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GC-01-080-4-16
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GU_147_/H
__TT__________________TTCC__
10._GU_147_/H
__TT__________________TTCC__
11._GU_147_/H
__TT__________________TTCC__
12._GU_147_/H
__TT__________________TTCC__
13._GU_147_/H
__TT__________________TTCC__
14._GU_147_/H
__TT__________________TTCC__
15._GU_147_/H
__TT__________________TTCC__
16._GU_147_/H
__TT__________________TTCC__
17._GU_147_/H
__TT__________________TTCC__
18._RUQ_222
TT____GG____________TTTT__TT
19._RUQ_222
__TT__________________TTCC__
20._RUQ_222
______GG____________________
21._GC-01-80-4-16
__AA__GGAAGG__GGGGAAAAAAGGAA
22._RUQ_222
__AA__GGAAGG__GGGGAAAAAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGGGGGGGAACCCCGG
1._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
2._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
3._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
4._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
5._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
6._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
7._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
8._GC-01-080-4-16
GGCCCCCCAAGGGGGGGGGGAACCCCGG
9._GU_147_/H
__CC__CCAAGG__GGGGGG______GG
10._GU_147_/H
__CC__CCAAGG__GGGGGG______GG
11._GU_147_/H
__CC__CCAAGG__GGGGGG______GG
12._GU_147_/H
__CC__CCAAGG__GGGGGG______GG
13._GU_147_/H
__CC__CCAAGG__GGGGGG______GG
14._GU_147_/H
__CC__CCAAGG__GGGGGG______GG
15._GU_147_/H
__CC__CCAAGG__GGGGGG______GG
16._GU_147_/H
__CC__CCAAGG__GGGGGG______GG
17._GU_147_/H
__CC__CCAAGG__GGGGGG______GG
18._RUQ_222
__CCCCCCAA__GGGGGGGGAA______
19._RUQ_222
__CC__CCAAGG__GGGGGG______AA
20._RUQ_222
GG____________GG__GGAA____AA
21._GC-01-80-4-16
GGGGGGGGAAGGGGGGCCCCAA______
22._RUQ_222
GGGGGGGGAAGGGGGGCCCCAA______
 7172737475767778798081828384
_Input profile
CCAAGGCCCCGGAACCCCTTAACTCCCC
1._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
2._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
3._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
4._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
5._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
6._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
7._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
8._GC-01-080-4-16
CCAAGGCCCCGGAACCCCTTAACTCCCC
9._GU_147_/H
CC__________AACC______CTCCCC
10._GU_147_/H
CC__________AACC______CTCCCC
11._GU_147_/H
CC__________AACC______CTCCCC
12._GU_147_/H
CC__________AACC______CTCCCC
13._GU_147_/H
CC__________AACC______CTCCCC
14._GU_147_/H
CC__________AACC______CTCCCC
15._GU_147_/H
CC__________AACC______CTCCCC
16._GU_147_/H
CC__________AACC______CTCCCC
17._GU_147_/H
CC__________AACC______CTCCCC
18._RUQ_222
____________AACC____AACT____
19._RUQ_222
CC__________AACC______CTCCCC
20._RUQ_222
____________AACC____AA____CC
21._GC-01-80-4-16
GGAAGGCCCC__AAGGGGTTAAAGGG__
22._RUQ_222
GGAAAACCCC__AACCGGTTAAGGAG__
 8586878889909192      
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-01-080-4-16
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GU_147_/H
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
10._GU_147_/H
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
11._GU_147_/H
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
12._GU_147_/H
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
13._GU_147_/H
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
14._GU_147_/H
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
15._GU_147_/H
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
16._GU_147_/H
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
17._GU_147_/H
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
18._RUQ_222
__GGCCCCTT______X_XX_XX_XX_XX_XX_X
19._RUQ_222
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
20._RUQ_222
____CC__TT______X_XX_XX_XX_XX_XX_X
21._GC-01-80-4-16
GG____GGAAAATTGGX_XX_XX_XX_XX_XX_X
22._RUQ_222
GG____GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_147_/H GC-01-080-4-16

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

3._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

7._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._GU_147_/H GC-01-080-4-16

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

9._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 5 > FP
 Dapeng Zhang, 2016

10._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 7
 Dapeng Zhang, 2016

12._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 12
 Dapeng Zhang, 2016

13._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 13
 Dapeng Zhang, 2016

14._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 16
 Dapeng Zhang, 2016

15._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 1 > FP
 Dapeng Zhang, 2016

16._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 14 > F
 Dapeng Zhang, 2016

17._GU_147_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1416 15 > F
 Dapeng Zhang, 2016

18._GU_147_/H RUQ_222

98.8 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._GU_147_/H RUQ_222

97.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._GU_147_/H RUQ_222

87.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._GU_147_/H GC-01-80-4-16

46.8 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

22._GU_147_/H RUQ_222

44.2 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240