SNP Profiles of UF 668   View Data

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 1234567891011121314
_Input profile
AAAACTACAGAGCTCCCTCTGGCTCCCT
1._GC-01-077-4-13
AAAACTACAGAGCTCCCTCTGGCTCCCT
2._GC-01-077-4-13
AAAACTACAGAGCTCCCTCTGGCTCCCT
3._GC-01-077-4-13
AAAACTACAGAGCTCCCTCTGGCTCCCT
4._GC-01-077-4-13
AAAACTACAGAGCTCCCTCTGGCTCCCT
5._UF_668
AAAACTAC________CTCTGG__CC__
6._UF_668
AAAACTAC________CTCTGG__CC__
7._UF_668
AAAACTAC________CTCTGG__CC__
8._UF_668
AAAACTAC________CTCTGG__CC__
9._UF_668
AAAACTAC________CTCTGG__CC__
10._UF_668
AAAACTAC__________CTGG__CC__
11._UF_668
AAAACTAC__________CTGG__CC__
12._UF_668
AAAACT____________CTGG__CC__
13._UF_668
AAAACTAC________CTCTGG__CC__
14._UF_668_Fld#_118_Plt#_6
AAAA__ACAGAG__GGAG__GGAGGGAG
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGAGTTAGATATCGCG
1._GC-01-077-4-13
ATCCAAAAGGCGGGAGTTAGATATCGCG
2._GC-01-077-4-13
ATCCAAAAGGCGGGAGTTAGATATCGCG
3._GC-01-077-4-13
ATCCAAAAGGCGGGAGTTAGATATCGCG
4._GC-01-077-4-13
ATCCAAAAGGCGGGAGTTAGATATCGCG
5._UF_668
______AA____GG______ATAT__CG
6._UF_668
______AA____GG______ATAT__CG
7._UF_668
______AA____GG______ATAT__CG
8._UF_668
______AA____GG______ATAT__CG
9._UF_668
______AA____GG______ATAT__CG
10._UF_668
______AA____GG______ATAT__CG
11._UF_668
______AA____GG______ATAT__CG
12._UF_668
______AA____GG______AT____CG
13._UF_668
______AA____GG______ATAT__CG
14._UF_668_Fld#_118_Plt#_6
ATCCAGAACC__GGAGAAAGATATCGCG
 2930313233343536373839404142
_Input profile
AACTGTAGCCACAGGTGGGTAGCCAACC
1._GC-01-077-4-13
AACTGTAGCCACAGGTGGGTAGCCAACC
2._GC-01-077-4-13
AACTGTAGCCACAGGTGGGTAGCCAACC
3._GC-01-077-4-13
AACTGTAGCCACAGGTGGGTAGCCAACC
4._GC-01-077-4-13
AACTGTAGCCACAGGTGGGTAGCCAACC
5._UF_668
AA______CC__AGGT____AG______
6._UF_668
AA______CC__AGGT____AG______
7._UF_668
AA______CC__AGGT____AG______
8._UF_668
AA______CC__AGGT____AG______
9._UF_668
AA______CC__AGGT____AG______
10._UF_668
________CC____GT____AG______
11._UF_668
________CC____GT____AG______
12._UF_668
________CC____GT____________
13._UF_668
AA______CC__AGGT____GG______
14._UF_668_Fld#_118_Plt#_6
AAAGACAGCCACAGACCCACAGGGAAGG
 4344454647484950515253545556
_Input profile
GTATCCAGAGAGCTCCGGGGGTTTCTCT
1._GC-01-077-4-13
GTATCCAGAGAGCTCCGGGGGTTTCTCT
2._GC-01-077-4-13
GTATCCAGAGAGCTCCGGGGGTTTCTCT
3._GC-01-077-4-13
GTATCCAGAGAGCTCCGGGGGTTTCTCT
4._GC-01-077-4-13
GTATCCAGAGAGCTCCGGGGGTTTCTCT
5._UF_668
____CC__________________CTCT
6._UF_668
____CC__________________CTCT
7._UF_668
____CC__________________CTCT
8._UF_668
____CC__________________CTCT
9._UF_668
____CC__________________CTCT
10._UF_668
____CC__________________CT__
11._UF_668
____CC__________________CT__
12._UF_668
____CC______________________
13._UF_668
____CC__________________CTCT
14._UF_668_Fld#_118_Plt#_6
AC__GG__AGAGAG__GGGGACAGAGAG
 5758596061626364656667686970
_Input profile
GTAGCGCTCTACGGAGACAGGTGTAGCT
1._GC-01-077-4-13
GTAGCGCTCTACGGAGACAGGTGTAGCT
2._GC-01-077-4-13
GTAGCGCTCTACGGAGACAGGTGTAGCT
3._GC-01-077-4-13
GTAGCGCTCTACGGAGACAGGTGTAGCT
4._GC-01-077-4-13
GTAGCGCTCTACGGAGACAGGTGTAGCT
5._UF_668
____CG__CTACGG__ACAGGTGT____
6._UF_668
____CG__CTACGG__ACAGGTGT____
7._UF_668
____CG__CTACGG__ACAGGTGT____
8._UF_668
____CG__CTACGG__ACAGGTGT____
9._UF_668
____CG__CTACGG__ACAGGTGT____
10._UF_668
________CTACGG__ACAG__GT____
11._UF_668
________CTACGG__ACAG__GT____
12._UF_668
________CTACGG__ACAG__GT____
13._UF_668
____CG__CTACGG__ACAGGTGT____
14._UF_668_Fld#_118_Plt#_6
ACAGCGAGAGACGGAGACAGACACAG__
 7172737475767778798081828384
_Input profile
CCGGTTACAGACAAAGCCCGCTATACCT
1._GC-01-077-4-13
CCGGTTACAGACAAAGCCCGCTATACCT
2._GC-01-077-4-13
CCGGTTACAGACAAAGCCCGCTATACCT
3._GC-01-077-4-13
CCGGTTACAGACAAAGCCCGCTATACCT
4._GC-01-077-4-13
CCGGTTACAGACAAAG__CGCTATACCT
5._UF_668
__GGTT__________CCCG______CT
6._UF_668
__GGTT__________CCCG______CT
7._UF_668
__GGTT__________CCCG______CT
8._UF_668
__GGTT__________CCCG______CT
9._UF_668
__GGTT____________CG______CT
10._UF_668
__AGTT__________CCCG______CT
11._UF_668
__AGTT__________CCCG______CT
12._UF_668
__AGTT__________CCCG______CT
13._UF_668
__AGTT__________CCCG______CT
14._UF_668_Fld#_118_Plt#_6
____AAACAGACAA__CCCGAGATACAG
 85868788899091929394    
_Input profile
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
1._GC-01-077-4-13
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
2._GC-01-077-4-13
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
3._GC-01-077-4-13
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
4._GC-01-077-4-13
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
5._UF_668
CTCT__AG__CTGTTT____X_XX_XX_XX_X
6._UF_668
CTCT__AG__CTGTTT____X_XX_XX_XX_X
7._UF_668
CTCT__AG__CTGTTT____X_XX_XX_XX_X
8._UF_668
CTCT__AG__CTGTTT____X_XX_XX_XX_X
9._UF_668
CTCT__AG__CTGTTT____X_XX_XX_XX_X
10._UF_668
CT________CTGTTT____X_XX_XX_XX_X
11._UF_668
CT________CTGTTT____X_XX_XX_XX_X
12._UF_668
CT________CTGTTT____X_XX_XX_XX_X
13._UF_668
CTCT__AG__CTGTTT____X_XX_XX_XX_X
14._UF_668_Fld#_118_Plt#_6
AG__AA____AGAAAAATGGX_XX_XX_XX_X

Input profile: UF_668 GC-01-077-4-13

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

1._UF_668 GC-01-077-4-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

2._UF_668 GC-01-077-4-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._UF_668 GC-01-077-4-13

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

4._UF_668 GC-01-077-4-13

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

5._UF_668

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 6
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._UF_668

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 13
 Dapeng Zhang, 2016

7._UF_668

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 16 > F
 Dapeng Zhang, 2016

8._UF_668

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 5 > FP
 Dapeng Zhang, 2016

9._UF_668

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 7 > FP
 Dapeng Zhang, 2016

10._UF_668

98.4 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

11._UF_668

98.4 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

12._UF_668

98.2 %
28 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 8 Row 27 31_33
 Dapeng Zhang, 2016

13._UF_668

97.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

14._UF_668 UF_668_Fld#_118_Plt#_6

56.9 %
80 shared markers

USDA-TARS, United States of America
Location: Field: 118, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240