SNP Profiles of GU 296 /H   View Data

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 Key

 1234567891011121314
_Input profile
AACCACGGGGCTCCCCCCGGTTCCTTAA
1._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
2._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
3._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
4._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
5._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
6._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
7._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
8._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
9._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
10._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
11._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
12._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
13._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
14._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
15._GC-01-076-4-12
AACCACGGGGCTCCCCCCGGTTCCTTAA
16._RUQ_230
____AC____CC________________
17._GC-01-76-4-12
AA__ACGGGG__GGGG__GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
2._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
3._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
4._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
5._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
6._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
7._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
8._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
9._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
10._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
11._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
12._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
13._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
14._GC-01-076-4-12
CCGGGGCCGGTTAATTGGTTAACCGGAA
15._GC-01-076-4-12
CCGG__CCGGTTAATTGGTTAACCGGAA
16._RUQ_230
__GGCC__________________GG__
17._GC-01-76-4-12
CCGGCC__GGAAGGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
8._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
9._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
10._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
11._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
12._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
13._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
14._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
15._GC-01-076-4-12
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
16._RUQ_230
______CC__GG________CC______
17._GC-01-76-4-12
AAAAGGCCCCGGAACCCCGGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
10._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
11._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
12._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
13._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
14._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
15._GC-01-076-4-12
TTTTAAGGAACCCCGGGGTTTTTTCCTT
16._RUQ_230
______GG____________________
17._GC-01-76-4-12
__AA__GGAAGG__GGGGAAAGAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
8._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
9._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
10._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
11._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
12._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
13._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
14._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
15._GC-01-076-4-12
GGCCCCCCAAGGGGAAGGGGGGAACCCC
16._RUQ_230
GG____________AAGG__GGAA____
17._GC-01-76-4-12
GGGGGGGGAAGGGGAAGGCCCCAA____
 7172737475767778798081828384
_Input profile
GGCCAAAGCCCCGGAACGCCTTAACCCT
1._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
2._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
3._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
4._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
5._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
6._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
7._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
8._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
9._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
10._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
11._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
12._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
13._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
14._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
15._GC-01-076-4-12
GGCCAAAGCCCCGGAACGCCTTAACCCT
16._RUQ_230
AA____________AACG____AA____
17._GC-01-76-4-12
__GGAAAGCCCC__AACGGGTTAAGGAG
 858687888990919293     
_Input profile
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
8._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
9._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
10._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
11._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
12._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
13._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
14._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
15._GC-01-076-4-12
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
16._RUQ_230
CC____CC__TT______X_XX_XX_XX_XX_X
17._GC-01-76-4-12
__GG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: GU_296_/H GC-01-076-4-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

4._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

5._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

10._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

11._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

16._GU_296_/H RUQ_230

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._GU_296_/H GC-01-76-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240