SNP Profiles of GU-296H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCACGGGGCTCCCCCCGGTTCCTTAA
1._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
2._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
3._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
4._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
5._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
6._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
7._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
8._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
9._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
10._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
11._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
12._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
13._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
14._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
15._GU_296_/H___
AACCACGGGGCTCCCCCCGGTTCCTTAA
16._GU_296_/H___
____AC____CC________________
17._GU_296_/H___
AA__ACGGGG__GGGG__GGAAGGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
2._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
3._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
4._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
5._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
6._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
7._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
8._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
9._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
10._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
11._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
12._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
13._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
14._GU_296_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
15._GU_296_/H___
CCGG__CCGGTTAATTGGTTAACCGGAA
16._GU_296_/H___
__GGCC__________________GG__
17._GU_296_/H___
CCGGCC__GGAAGGAAGGTTAAGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
8._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
9._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
10._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
11._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
12._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
13._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
14._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
15._GU_296_/H___
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
16._GU_296_/H___
______CC__GG________CC______
17._GU_296_/H___
AAAAGGCCCCGGAACCCCGGGGGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
10._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
11._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
12._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
13._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
14._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
15._GU_296_/H___
TTTTAAGGAACCCCGGGGTTTTTTCCTT
16._GU_296_/H___
______GG____________________
17._GU_296_/H___
__AA__GGAAGG__GGGGAAAGAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
8._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
9._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
10._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
11._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
12._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
13._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
14._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
15._GU_296_/H___
GGCCCCCCAAGGGGAAGGGGGGAACCCC
16._GU_296_/H___
GG____________AAGG__GGAA____
17._GU_296_/H___
GGGGGGGGAAGGGGAAGGCCCCAA____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGCCAAAGCCCCGGAACGCCTTAACCCT
1._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
2._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
3._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
4._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
5._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
6._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
7._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
8._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
9._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
10._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
11._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
12._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
13._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
14._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
15._GU_296_/H___
GGCCAAAGCCCCGGAACGCCTTAACCCT
16._GU_296_/H___
AA____________AACG____AA____
17._GU_296_/H___
__GGAAAGCCCC__AACGGGTTAAGGAG
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
5._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
6._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
7._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
8._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
9._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
10._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
11._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
12._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
13._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
14._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
15._GU_296_/H___
CCCCAGCCCCTTTTAAGGX_XX_XX_XX_XX_X
16._GU_296_/H___
CC____CC__TT______X_XX_XX_XX_XX_X
17._GU_296_/H___
__GG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: GU_296_/H GC-01-076-4-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

3._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

4._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

5._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

10._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

11._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._GU_296_/H GC-01-076-4-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._GU_296_/H GC-01-076-4-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

16._GU_296_/H RUQ_230

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

17._GU_296_/H GC-01-76-4-12

48.1 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240