SNP Profiles of GU 221 /H   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AACCCCGGGGCTCCCCCCGGTTCCTTAA
1._GC-01-074-4-10
AACCCCGGGGCTCCCCCCGGTTCCTTAA
2._GC-01-074-4-10
AACCCCGGGGCTCCCCCCGGTTCCTTAA
3._GC-01-074-4-10
AACCCCGGGGCTCCCCCCGGTTCCTTAA
4._GC-01-074-4-10
AACCCCGGGGCTCCCCCCGGTTCCTTAA
5._GC-01-074-4-10
AACCCCGGGGCTCCCCCCGGTTCCTTAA
6._GC-01-074-4-10
AACCCCGGGGCTCCCCCCGGTTCCTTAA
7._GU_221_/H
AACCCC____CCCCGG_CC__
8._GU_221_/H
AACCCC____CCCCGG_CC__
9._GU_221_/H
AACCCC____CCCCGG_CC__
10._GU_221_/H
AACCCC____CCCCGG_CC__
11._GU_221_/H
AACCCC____CCCCGG_CC__
12._GU_221_/H
AACCCC____CCCCGG_CC__
13._GU_221_/H
AACCCC____CCCCGG_CC__
14._GC-01-074-4-10
ATCCCCAAAACTTTCCTTGGTTTTTTAA
15._GU_221_/H
ATCCCC____CCTTGG_TT__
16._GC-01-74-4-10
AA_CCGGGG_GGGG_GGAAGGAATT
17._GU_221_H_Fld#_162_Plt#_1
AA_CCGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGCTAATTGGAAAACCGGAA
1._GC-01-074-4-10
CCGGGGCCGGCTAATTGGAAAACCGGAA
2._GC-01-074-4-10
CCGGGGCCGGCTAATTGGAAAACCGGAA
3._GC-01-074-4-10
CCGGGGCCGGCTAATTGGAAAACCGGAA
4._GC-01-074-4-10
CCGGGGCCGGCTAATTGGAAAACCGGAA
5._GC-01-074-4-10
CCGGGGCCGGCTAATTGGAAAACCGGAA
6._GC-01-074-4-10
CCGG_CCGGCTAATTGGAAAACCGGAA
7._GU_221_/H
_GG__GG____AAAA_GGAA
8._GU_221_/H
_GG__GG____AAAA_GGAA
9._GU_221_/H
_GG__GG____AAAA_GGAA
10._GU_221_/H
_GG__GG____AAAA_GGAA
11._GU_221_/H
_GG__GG____AAAA_GGAA
12._GU_221_/H
_GG__GG____AAAA_GGAA
13._GU_221_/H
_GG__GG____AAAA_GGAA
14._GC-01-074-4-10
AAGGCCGGCGCCAACCGGAAAAGGCCTT
15._GU_221_/H
_GG__CG____AAAA_CCTT
16._GC-01-74-4-10
CCGGCC_GGAGAGAAGGAAAAGGCCAA
17._GU_221_H_Fld#_162_Plt#_1
CCGGCC_GGAGAGAAGGAAAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCAATTGGTTAGCCGGCCGG
1._GC-01-074-4-10
TTTTGGCCCCAATTGGTTAGCCGGCCGG
2._GC-01-074-4-10
TTTTGGCCCCAATTGGTTAGCCGGCCGG
3._GC-01-074-4-10
TTTTGGCCCCAATTGGTTAGCCGGCCGG
4._GC-01-074-4-10
TTTTGGCCCCAATTGGTTAGCCGGCCGG
5._GC-01-074-4-10
TTTTGGCCCCAATTGGTTAGCCGGCCGG
6._GC-01-074-4-10
TTTTGGCCCCAATTGGTTAGCCGGCCGG
7._GU_221_/H
___CC_AATT__AG____
8._GU_221_/H
___CC_AATT__AG____
9._GU_221_/H
___CC_AATT__AG____
10._GU_221_/H
___CC_AATT__AG____
11._GU_221_/H
___CC_AATT__AG____
12._GU_221_/H
___CC_AATT__AG____
13._GU_221_/H
___CC_AATT__AG____
14._GC-01-074-4-10
TTTTAAGGCCAAGGTTTTAGCCGGCGGG
15._GU_221_/H
___GG_AAGG__AG____
16._GC-01-74-4-10
AAAAGGCCCCAAAACCAAAGGGGGGGCC
17._GU_221_H_Fld#_162_Plt#_1
AAAAGGCCCCAAAACCAAAGGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAAGAACCCCGGGGTTTTCCTTGG
1._GC-01-074-4-10
TTTTAAAGAACCCCGGGGTTTTCCTTGG
2._GC-01-074-4-10
TTTTAAAGAACCCCGGGGTTTTCCTTGG
3._GC-01-074-4-10
TTTTAAAGAACCCCGGGGTTTTCCTTGG
4._GC-01-074-4-10
TTTTAAAGAACCCCGGGGTTTTCCTTGG
5._GC-01-074-4-10
TTTTAAAGAACCCCGGGGTTTTCCTTGG
6._GC-01-074-4-10
TTTTAAAGAACCCCGGGGTTTTCCTTGG
7._GU_221_/H
_TT________TTCC__
8._GU_221_/H
_TT________TTCC__
9._GU_221_/H
_TT________TTCC__
10._GU_221_/H
_TT________TTCC__
11._GU_221_/H
_TT________TTCC__
12._GU_221_/H
_TT________TTCC__
13._GU_221_/H
_TT________TTCC__
14._GC-01-074-4-10
TTTTGGAAAACCACAGAATTTTCCTTGG
15._GU_221_/H
_TT________TTCC__
16._GC-01-74-4-10
_AA_AGAAGG_GGGGAAAAGGAAGG
17._GU_221_H_Fld#_162_Plt#_1
_AA_AGAAGG_GGGGAAAAGGAAGG
 5758596061626364656667686970
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCAG
1._GC-01-074-4-10
CCCCCCAAGGGGAAGGGGGGAACCCCAG
2._GC-01-074-4-10
CCCCCCAAGGGGAAGGGGGGAACCCCAG
3._GC-01-074-4-10
CCCCCCAAGGGGAAGGGGGGAACCCCAG
4._GC-01-074-4-10
CCCCCCAAGGGGAAGGGGGGAACCCCAG
5._GC-01-074-4-10
CCCCCCAAGGGGAAGGGGGGAACCCCAG
6._GC-01-074-4-10
CCCCCCAAGGGGAAGGGGGGAACCCCAG
7._GU_221_/H
CC_CCAAGG_AAGGGGGG___AG
8._GU_221_/H
CC_CCAAGG_AAGGGGGG___AG
9._GU_221_/H
CC_CCAAGG_AAGGGGGG___AG
10._GU_221_/H
CC_CCAAGG_AAGGGGGG___AG
11._GU_221_/H
CC_CCAAGG_AAGGGGGG___AG
12._GU_221_/H
CC_CCAAGG_AAGGGGGG___AG
13._GU_221_/H
CC_CCAAGG_AAGGGGGG___AG
14._GC-01-074-4-10
CGCCCCCCGGGGACGGGGGGAACTCGAA
15._GU_221_/H
CG_CCCCGG_ACGGGGGG___AA
16._GC-01-74-4-10
GGGGGGAAGGGGAAGGCCCCAA___
17._GU_221_H_Fld#_162_Plt#_1
GGGGGGAAGGGGAAGGCCCCAA___
 7172737475767778798081828384
_Input profile
CCAAAGCCCCGGAAGGCCTTAACCTTCC
1._GC-01-074-4-10
CCAAAGCCCCGGAAGGCCTTAACCTTCC
2._GC-01-074-4-10
CCAAAGCCCCGGAAGGCCTTAACCTTCC
3._GC-01-074-4-10
CCAAAGCCCCGGAAGGCCTTAACCTTCC
4._GC-01-074-4-10
CCAAAGCCCCGGAAGGCCTTAACCTTCC
5._GC-01-074-4-10
CCAAAGCCCCGGAAGGCCTTAACCTTCC
6._GC-01-074-4-10
CCAAAGCCCCGGAAGGCCTTAACCTTCC
7._GU_221_/H
CC_____AAGG___CCTTCC
8._GU_221_/H
CC_____AAGG___CCTTCC
9._GU_221_/H
CC_____AAGG___CCTTCC
10._GU_221_/H
CC_____AAGG___CCTTCC
11._GU_221_/H
CC_____AAGG___CCTTCC
12._GU_221_/H
CC_____AAGG___CCTTCC
13._GU_221_/H
CC_____AAGG___CCTTCC
14._GC-01-074-4-10
CTCCGGCCCCGGACCCCCAACCTTCCCC
15._GU_221_/H
CT_____ACCC___TTCCCC
16._GC-01-74-4-10
GGAAAGCCCC_AACCGGTTAAGGAA_
17._GU_221_H_Fld#_162_Plt#_1
GGAAAGCCCC_AACCGGTTAAGGAA_
 8586878889909192      
_Input profile
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-074-4-10
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-074-4-10
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-074-4-10
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-074-4-10
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-074-4-10
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-074-4-10
CCAGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GU_221_/H
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
8._GU_221_/H
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
9._GU_221_/H
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
10._GU_221_/H
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
11._GU_221_/H
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
12._GU_221_/H
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
13._GU_221_/H
_AG_CCTTTT__X_XX_XX_XX_XX_XX_X
14._GC-01-074-4-10
CCGGCCTTGTTTTTGGX_XX_XX_XX_XX_XX_X
15._GU_221_/H
_GG_TTGTTT__X_XX_XX_XX_XX_XX_X
16._GC-01-74-4-10
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X
17._GU_221_H_Fld#_162_Plt#_1
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_221_/H GC-01-074-4-10

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

1._GU_221_/H GC-01-074-4-10

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

2._GU_221_/H GC-01-074-4-10

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

3._GU_221_/H GC-01-074-4-10

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

4._GU_221_/H GC-01-074-4-10

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._GU_221_/H GC-01-074-4-10

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._GU_221_/H GC-01-074-4-10

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._GU_221_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 6
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._GU_221_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 9
 Dapeng Zhang, 2016

9._GU_221_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 15
 Dapeng Zhang, 2016

10._GU_221_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 16
 Dapeng Zhang, 2016

11._GU_221_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 1 > FP
 Dapeng Zhang, 2016

12._GU_221_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 12 > F
 Dapeng Zhang, 2016

13._GU_221_/H

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 14 > F
 Dapeng Zhang, 2016

14._GU_221_/H GC-01-074-4-10

61.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

15._GU_221_/H

60.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 4 > FP
 Dapeng Zhang, 2016

16._GU_221_/H GC-01-74-4-10

48.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

17._GU_221_/H GU_221_H_Fld#_162_Plt#_1

48.1 %
78 shared markers

USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240