SNP Profiles of GU 221 /H   View Data

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 Key

 1234567891011121314
_Input profile
ATAACCCCAAAACTTTCCTTGGTTTTTT
1._GU_221_/H
ATAACCCC________CCTTGG__TT__
2._GC-01-074-4-10
AA__CCCCGGGGCTCCCCCCGGTTCCTT
3._GC-01-074-4-10
AA__CCCCGGGGCTCCCCCCGGTTCCTT
4._GC-01-074-4-10
AA__CCCCGGGGCTCCCCCCGGTTCCTT
5._GC-01-074-4-10
AA__CCCCGGGGCTCCCCCCGGTTCCTT
6._GC-01-074-4-10
AA__CCCCGGGGCTCCCCCCGGTTCCTT
7._GC-01-074-4-10
AA__CCCCGGGGCTCCCCCCGGTTCCTT
8._GC-01-074-4-10
AA__CCCCGGGGCTCCCCCCGGTTCCTT
9._GU_221_/H
AA__CCCC________CCCCGG__CC__
10._GU_221_/H
AA__CCCC________CCCCGG__CC__
11._GU_221_/H
AA__CCCC________CCCCGG__CC__
12._GU_221_/H
AA__CCCC________CCCCGG__CC__
13._GU_221_/H
AA__CCCC________CCCCGG__CC__
14._GU_221_/H
AA__CCCC________CCCCGG__CC__
15._GU_221_/H
AA__CCCC________CCCCGG__CC__
16._GC-01-74-4-10
AA____CCGGGG__GGGG__GGAAGGAA
17._GU_221_H_Fld#_162_Plt#_1
AACC__CCGGGG__GGGG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAAGGCCGGCGCCAACCGGAAAAGG
1._GU_221_/H
______GG____CG________AAAA__
2._GC-01-074-4-10
AACC__GG__CCGGCTAATTGGAAAACC
3._GC-01-074-4-10
AACC__GGGGCCGGCTAATTGGAAAACC
4._GC-01-074-4-10
AACC__GGGGCCGGCTAATTGGAAAACC
5._GC-01-074-4-10
AACC__GGGGCCGGCTAATTGGAAAACC
6._GC-01-074-4-10
AACC__GGGGCCGGCTAATTGGAAAACC
7._GC-01-074-4-10
AACC__GGGGCCGGCTAATTGGAAAACC
8._GC-01-074-4-10
AACC__GGGGCCGGCTAATTGGAAAACC
9._GU_221_/H
______GG____GG________AAAA__
10._GU_221_/H
______GG____GG________AAAA__
11._GU_221_/H
______GG____GG________AAAA__
12._GU_221_/H
______GG____GG________AAAA__
13._GU_221_/H
______GG____GG________AAAA__
14._GU_221_/H
______GG____GG________AAAA__
15._GU_221_/H
______GG____GG________AAAA__
16._GC-01-74-4-10
TTCCGGGGCC__GGAGAGAAGGAAAAGG
17._GU_221_H_Fld#_162_Plt#_1
TTCCGGGGCC__GGAGAGAAGGAAAAGG
 2930313233343536373839404142
_Input profile
CCTTTTTTAAGGCCAAGGTTTTAGCCGG
1._GU_221_/H
CCTT______GG__AAGG____AG____
2._GC-01-074-4-10
GGAATTTTGGCCCCAATTGGTTAGCCGG
3._GC-01-074-4-10
GGAATTTTGGCCCCAATTGGTTAGCCGG
4._GC-01-074-4-10
GGAATTTTGGCCCCAATTGGTTAGCCGG
5._GC-01-074-4-10
GGAATTTTGGCCCCAATTGGTTAGCCGG
6._GC-01-074-4-10
GGAATTTTGGCCCCAATTGGTTAGCCGG
7._GC-01-074-4-10
GGAATTTTGGCCCCAATTGGTTAGCCGG
8._GC-01-074-4-10
GGAATTTTGGCCCCAATTGGTTAGCCGG
9._GU_221_/H
GGAA______CC__AATT____AG____
10._GU_221_/H
GGAA______CC__AATT____AG____
11._GU_221_/H
GGAA______CC__AATT____AG____
12._GU_221_/H
GGAA______CC__AATT____AG____
13._GU_221_/H
GGAA______CC__AATT____AG____
14._GU_221_/H
GGAA______CC__AATT____AG____
15._GU_221_/H
GGAA______CC__AATT____AG____
16._GC-01-74-4-10
CCAAAAAAGGCCCCAAAACCAAAGGGGG
17._GU_221_H_Fld#_162_Plt#_1
CCAAAAAAGGCCCCAAAACCAAAGGGGG
 4344454647484950515253545556
_Input profile
CGGGTTTTGGAAAACCACAGAATTTTTT
1._GU_221_/H
______TT__________________TT
2._GC-01-074-4-10
CCGGTTTTAAAGAACCCCGGGGTTTTTT
3._GC-01-074-4-10
CCGGTTTTAAAGAACCCCGGGGTTTTTT
4._GC-01-074-4-10
CCGGTTTTAAAGAACCCCGGGGTTTTTT
5._GC-01-074-4-10
CCGGTTTTAAAGAACCCCGGGGTTTTTT
6._GC-01-074-4-10
CCGGTTTTAAAGAACCCCGGGGTTTTTT
7._GC-01-074-4-10
CCGGTTTTAAAGAACCCCGGGGTTTTTT
8._GC-01-074-4-10
CCGGTTTTAAAGAACCCCGGGGTT__TT
9._GU_221_/H
______TT__________________TT
10._GU_221_/H
______TT__________________TT
11._GU_221_/H
______TT__________________TT
12._GU_221_/H
______TT__________________TT
13._GU_221_/H
______TT__________________TT
14._GU_221_/H
______TT__________________TT
15._GU_221_/H
______TT__________________TT
16._GC-01-74-4-10
GGCC__AA__AGAAGG__GGGGAAAGAA
17._GU_221_H_Fld#_162_Plt#_1
GGCC__AA__AGAAGG__GGGGAAAGAA
 5758596061626364656667686970
_Input profile
CCTTGGCGCCCCCCGGGGACGGGGGGAA
1._GU_221_/H
CC____CG__CCCCGG__ACGGGGGG__
2._GC-01-074-4-10
CCTTGGCCCCCCAAGGGGAAGGGGGGAA
3._GC-01-074-4-10
CCTTGGCCCCCCAAGGGGAAGGGGGGAA
4._GC-01-074-4-10
CCTTGGCCCCCCAAGGGGAAGGGGGGAA
5._GC-01-074-4-10
CCTTGGCCCCCCAAGGGGAAGGGGGGAA
6._GC-01-074-4-10
CCTTGGCCCCCCAAGGGGAAGGGGGGAA
7._GC-01-074-4-10
CCTTGGCCCCCCAAGGGGAAGGGGGGAA
8._GC-01-074-4-10
CCTTGGCCCCCCAAGGGGAAGGGGGGAA
9._GU_221_/H
CC____CC__CCAAGG__AAGGGGGG__
10._GU_221_/H
CC____CC__CCAAGG__AAGGGGGG__
11._GU_221_/H
CC____CC__CCAAGG__AAGGGGGG__
12._GU_221_/H
CC____CC__CCAAGG__AAGGGGGG__
13._GU_221_/H
CC____CC__CCAAGG__AAGGGGGG__
14._GU_221_/H
CC____CC__CCAAGG__AAGGGGGG__
15._GU_221_/H
CC____CC__CCAAGG__AAGGGGGG__
16._GC-01-74-4-10
GGAAGGGGGGGGAAGGGGAAGGCCCCAA
17._GU_221_H_Fld#_162_Plt#_1
GGAAGGGGGGGGAAGGGGAAGGCCCCAA
 7172737475767778798081828384
_Input profile
CTCGAACTCCGGCCCCGGACCCCCAACC
1._GU_221_/H
____AACT__________ACCC______
2._GC-01-074-4-10
CCCCAGCCAAAGCCCCGGAAGGCCTTAA
3._GC-01-074-4-10
CCCCAGCCAAAGCCCCGGAAGGCCTTAA
4._GC-01-074-4-10
CCCCAGCCAAAGCCCCGGAAGGCCTTAA
5._GC-01-074-4-10
CCCCAGCCAAAGCCCCGGAAGGCCTTAA
6._GC-01-074-4-10
CCCCAGCCAAAGCCCCGGAAGGCCTTAA
7._GC-01-074-4-10
CCCCAGCCAAAGCCCCGGAAGGCCTTAA
8._GC-01-074-4-10
CCCCAGCCAAAGCCCCGGAAGGCCTTAA
9._GU_221_/H
____AGCC__________AAGG______
10._GU_221_/H
____AGCC__________AAGG______
11._GU_221_/H
____AGCC__________AAGG______
12._GU_221_/H
____AGCC__________AAGG______
13._GU_221_/H
____AGCC__________AAGG______
14._GU_221_/H
____AGCC__________AAGG______
15._GU_221_/H
____AGCC__________AAGG______
16._GC-01-74-4-10
______GGAAAGCCCC__AACCGGTTAA
17._GU_221_H_Fld#_162_Plt#_1
______GGAAAGCCCC__AACCGGTTAA
 8586878889909192939495   
_Input profile
TTCCCCCCGGCCTTGTTTTTGGX_XX_XX_X
1._GU_221_/H
TTCCCC__GG__TTGTTT____X_XX_XX_X
2._GC-01-074-4-10
CCTTCCCCAGCCCCTTTTAAGGX_XX_XX_X
3._GC-01-074-4-10
CCTTCCCCAGCCCCTTTTAAGGX_XX_XX_X
4._GC-01-074-4-10
CCTTCCCCAGCCCCTTTTAAGGX_XX_XX_X
5._GC-01-074-4-10
CCTTCCCCAGCCCCTTTTAAGGX_XX_XX_X
6._GC-01-074-4-10
CCTTCCCCAGCCCCTTTTAAGGX_XX_XX_X
7._GC-01-074-4-10
CCTTCCCCAGCCCCTTTTAAGGX_XX_XX_X
8._GC-01-074-4-10
CCTTCCCCAGCCCCTTTTAAGGX_XX_XX_X
9._GU_221_/H
CCTTCC__AG__CCTTTT____X_XX_XX_X
10._GU_221_/H
CCTTCC__AG__CCTTTT____X_XX_XX_X
11._GU_221_/H
CCTTCC__AG__CCTTTT____X_XX_XX_X
12._GU_221_/H
CCTTCC__AG__CCTTTT____X_XX_XX_X
13._GU_221_/H
CCTTCC__AG__CCTTTT____X_XX_XX_X
14._GU_221_/H
CCTTCC__AG__CCTTTT____X_XX_XX_X
15._GU_221_/H
CCTTCC__AG__CCTTTT____X_XX_XX_X
16._GC-01-74-4-10
GGAA__GG____GGAAAATTGGX_XX_XX_X
17._GU_221_H_Fld#_162_Plt#_1
GGAA__GG____GGAAAATTGGX_XX_XX_X

Input profile: GU_221_/H GC-01-074-4-10

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

1._GU_221_/H

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 4 > FP
 Dapeng Zhang, 2016

2._GU_221_/H GC-01-074-4-10

62.5 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._GU_221_/H GC-01-074-4-10

61.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

4._GU_221_/H GC-01-074-4-10

61.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

5._GU_221_/H GC-01-074-4-10

61.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

6._GU_221_/H GC-01-074-4-10

61.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._GU_221_/H GC-01-074-4-10

61.8 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._GU_221_/H GC-01-074-4-10

61.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

9._GU_221_/H

60.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 6
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._GU_221_/H

60.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 9
 Dapeng Zhang, 2016

11._GU_221_/H

60.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 15
 Dapeng Zhang, 2016

12._GU_221_/H

60.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 16
 Dapeng Zhang, 2016

13._GU_221_/H

60.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 1 > FP
 Dapeng Zhang, 2016

14._GU_221_/H

60.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 12 > F
 Dapeng Zhang, 2016

15._GU_221_/H

60.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7410 ( >> 1410) 14 > F
 Dapeng Zhang, 2016

16._GU_221_/H GC-01-74-4-10

36.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

17._GU_221_/H GU_221_H_Fld#_162_Plt#_1

35.8 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240