SNP Profiles of EET 400 [ECU]   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTACAGGGCTCCCCCTGGCTCTTT
1._GC-01-066-4-02
AAAACTACAGGGCTCCCCCTGGCTCTTT
2._GC-01-066-4-02
AAAACTACAGGGCTCCCCCTGGCTCTTT
3._EET_400_[ECU]
AAAACTAC________CCCTGG__CT__
4._EET_400_[ECU]
AAAACTAC________CCCTGG__CT__
5._EET_400_[ECU]
AAAACTAC________CCCTGG__CT__
6._EET_400_[ECU]
AAACCTAC________CCCTGG__CT__
7._RUQ_760
AAACCTAC________CCCTGG__CT__
8._EET_400_[ECU]
__ACCTAC________CCCTGG__CT__
9._RUQ_760
____CTAC____TT__CC____CTTT__
10._GC-01-066-4-02
AA__CCAAGGGGCCCCCCCCGGTTTTTT
11._GC-01-066-4-02
AA__CCAAGGGGCCCCCCCCGGTTTTTT
12._GC-01-066-4-02
AA__CCAAGGGGCCCCCCCCGGTTTTTT
13._GC-01-066-4-02
AA__CCAAGGGGCCCCCCCCGGTTTTTT
14._GC-01-066-4-02
AA__CCAAGGGGCCCCCCCCGGTTTTTT
15._EET_400_[ECU]
AACCCCCC________CCCCGG__CC__
16._EET_400_[ECU]
AA__CCAA________CCCCGG__TT__
17._EET_400_[ECU]
AA__CCAA________CCCCGG__TT__
18._EET_400_[ECU]
AA__CCAA________CCCCGG__TT__
19._EET_400_[ECU]
AA__CCAA________CCCCGG__TT__
20._EET_400_[ECU]
AA__CCAA________CCCCGG__TT__
21._MITC-000396
AAAA__ACAAAG__GGGG__AGAGAGAA
22._EET_400_[ECU]_Fld#_153_Plt#_2
AACC__ACAGAG__AGGG__AGAGAGAG
 1516171819202122232425262728
_Input profile
ATAAGGCGCGCGCCAATTAGATAACGCG
1._GC-01-066-4-02
ATAAGGCGCGCGCCAATTAGATAACGCG
2._GC-01-066-4-02
ATAAGGCGCGCGCCAATTAGATAACGCG
3._EET_400_[ECU]
____GG____CG________ATAA__CG
4._EET_400_[ECU]
____GG____CG________ATAA__CG
5._EET_400_[ECU]
____GG____CG________ATAA__CG
6._EET_400_[ECU]
____GG____CG________ATAA__CG
7._RUQ_760
____GG____CG________ATAA__CG
8._EET_400_[ECU]
____GG____CG________ATAA__CG
9._RUQ_760
________CC____________AACCCG
10._GC-01-066-4-02
AAAAGGGGCCGGTTAATTGGTTAACCCG
11._GC-01-066-4-02
AAAAGGGGCCGGTTAATTGGTTAACCCG
12._GC-01-066-4-02
AAAAGGGGCCGGTTAATTGGTTAACCCG
13._GC-01-066-4-02
AAAAGGGGCCGGTTAATTGGTTAACCCG
14._GC-01-066-4-02
AAAAGGGGCCGGTTAATTGGTTAACCCG
15._EET_400_[ECU]
____GG____CG________ATAA__GG
16._EET_400_[ECU]
____GG____GG________TTAA__CG
17._EET_400_[ECU]
____GG____GG________TTAA__CG
18._EET_400_[ECU]
____GG____GG________TTAA__CG
19._EET_400_[ECU]
____GG____GG________TTAA__CG
20._EET_400_[ECU]
____GG____GG________TTAA__CG
21._MITC-000396
ATAAGGGG__CCGGAAAGGGATAACGCC
22._EET_400_[ECU]_Fld#_153_Plt#_2
ATACGGGG__GGGGAAAAGGAAAACCGG
 2930313233343536373839404142
_Input profile
AATTGTGGGGCCAAGTGGTTAGCCGGCC
1._GC-01-066-4-02
AATTGTGGGGCCAAGTGGTTAGCCGGCC
2._GC-01-066-4-02
AATTGTGGGGCCAAGTGGTTAGCCGGCC
3._EET_400_[ECU]
AA______GG__AAGT____AG______
4._EET_400_[ECU]
AA______GG__AAGT____AG______
5._EET_400_[ECU]
AA______GG__AAGT____AG______
6._EET_400_[ECU]
AA______GG__AAGT____AG______
7._RUQ_760
AA______GG__AGGT____AG______
8._EET_400_[ECU]
AA______GG__AAGT____AG______
9._RUQ_760
______GGCGCCAAGT____AGCC____
10._GC-01-066-4-02
AATTGGGGGGCCGGGGGGTTAACCGGCC
11._GC-01-066-4-02
AATTGGGGGGCCGGGGGGTTAACCGGCC
12._GC-01-066-4-02
AATTGGGGGGCCGGGGGGTTAACCGGCC
13._GC-01-066-4-02
AATTGGGGGGCCGGGGGGTTAACCGGCC
14._GC-01-066-4-02
AATTGGGGGGCCGGGGGGTTAACCGGCC
15._EET_400_[ECU]
AA______GG__AGGG____AG______
16._EET_400_[ECU]
AA______GG__GGGG____AA______
17._EET_400_[ECU]
AA______GG__GGGG____AA______
18._EET_400_[ECU]
AA______GG__GGGG____AA______
19._EET_400_[ECU]
AA______GG__GGGG____AA______
20._EET_400_[ECU]
AA______GG__GGGG____AA______
21._MITC-000396
ATAAACAGCGACAAAACCAAAAGGGGGG
22._EET_400_[ECU]_Fld#_153_Plt#_2
ATAAAAAGCGACAAACCCAAAAGGGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAGAGAACCACGGGGGTCTCCTT
1._GC-01-066-4-02
GGTTTTAGAGAACCACGGGGGTCTCCTT
2._GC-01-066-4-02
GGTTTTAGAGAACCACGGGGGTCTCCTT
3._EET_400_[ECU]
____TT________________CTCC__
4._EET_400_[ECU]
____TT________________CTCC__
5._EET_400_[ECU]
____TT________________CTCC__
6._EET_400_[ECU]
____TT________________CTCC__
7._RUQ_760
____TT________________CTCC__
8._EET_400_[ECU]
____TT________________CT____
9._RUQ_760
GGTT____AG____________CT__TT
10._GC-01-066-4-02
GGTTTTAAGGAACCCCGGAAGGCTCCTT
11._GC-01-066-4-02
GGTTTTAAGGAACCCCGGAAGG__CCTT
12._GC-01-066-4-02
GGTTTTAAGGAACCCCGGAAGGCCCCTT
13._GC-01-066-4-02
GGTTTTAAGGAACCCCGGAAGGCCCCTT
14._GC-01-066-4-02
GGTTTTAAGGAACCCCGGAAGGCCCCTT
15._EET_400_[ECU]
____TT________________CTCC__
16._EET_400_[ECU]
____TT________________CTCC__
17._EET_400_[ECU]
____TT__________________CC__
18._EET_400_[ECU]
____TT________________CCCC__
19._EET_400_[ECU]
____TT________________CCCC__
20._EET_400_[ECU]
____TT________________CCCC__
21._MITC-000396
CC__AG__AAAAGG__AGAGCCAAGGAA
22._EET_400_[ECU]_Fld#_153_Plt#_2
CC__AA__GGAGAG__GGAGCCAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCTTCCGGGGACAGGGGGAGTTCC
1._GC-01-066-4-02
GGCCCCTTCCGGGGACAGGGGGAGTTCC
2._GC-01-066-4-02
GGCCCCTTCCGGGGACAGGGGGAGTTCC
3._EET_400_[ECU]
__CC__TTCCGG__ACAGGGGG______
4._EET_400_[ECU]
__CC__TTCCGG__ACAGGGGG______
5._EET_400_[ECU]
__CC__TTCCGG__ACAGGGGG______
6._EET_400_[ECU]
__CC__TTCCGG__ACAGGGGG______
7._RUQ_760
__CC__TTCCGG__ACAGGGGG______
8._EET_400_[ECU]
______TTCCGG__ACAGGGGG______
9._RUQ_760
__CCCCTTCC__GGACAGGGGGAG____
10._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
11._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
12._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
13._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
14._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
15._EET_400_[ECU]
__CC__CCACGG__ACAATTGG______
16._EET_400_[ECU]
__CC__TTAAGG__AAGGTTGG______
17._EET_400_[ECU]
__CC__TTAAGG__AAGGTTGG______
18._EET_400_[ECU]
__CC__TTAAGG__AAGGTTGG______
19._EET_400_[ECU]
__CC__TTAAGG__AAGGTTGG______
20._EET_400_[ECU]
__CC__TTAAGG__AAGGTTGG______
21._MITC-000396
GGGGGGAGCCCGGGCCAGCCCCAG____
22._EET_400_[ECU]_Fld#_153_Plt#_2
GGGGGGAGCCCGGGACAGCCACAA____
 7172737475767778798081828384
_Input profile
AACTACAGACCCAGACCCCCATACCTTT
1._GC-01-066-4-02
AACTACAGACCCAGACCCCCATACCTTT
2._GC-01-066-4-02
AACTACAGACCCAGACCCCCATACCTTT
3._EET_400_[ECU]
AACT__________ACCC______CTTT
4._EET_400_[ECU]
AACT__________ACCC______CTTT
5._EET_400_[ECU]
AACT__________ACCC______CTTT
6._EET_400_[ECU]
AACT__________ACCC______CTTT
7._RUQ_760
AACT__________ACCC______CTTT
8._EET_400_[ECU]
AACT__________ACCC______CTTT
9._RUQ_760
______________ACCC____ACCT__
10._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
11._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
12._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
13._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
14._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
15._EET_400_[ECU]
AATT__________ACGG______TTCT
16._EET_400_[ECU]
AATT__________CCGG______CCTT
17._EET_400_[ECU]
AATT__________CCGG______CCTT
18._EET_400_[ECU]
AATT__________CCGG______CCTT
19._EET_400_[ECU]
AATT__________CCGG______CCTT
20._EET_400_[ECU]
AATT__________CCGG______CCTT
21._MITC-000396
__GGCCGGACAC__ACCGGGATCCAAAA
22._EET_400_[ECU]_Fld#_153_Plt#_2
__AGACAGACAC__ACCGGGATCCAGAG
 858687888990919293     
_Input profile
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
1._GC-01-066-4-02
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
2._GC-01-066-4-02
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
3._EET_400_[ECU]
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
4._EET_400_[ECU]
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
5._EET_400_[ECU]
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
6._EET_400_[ECU]
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
7._RUQ_760
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
8._EET_400_[ECU]
____AG__CCGT______X_XX_XX_XX_XX_X
9._RUQ_760
____AGCCCTGT______X_XX_XX_XX_XX_X
10._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
11._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
12._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
13._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
14._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
15._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
16._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
17._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
18._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
19._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
20._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
21._MITC-000396
__AG____AGACAGATGGX_XX_XX_XX_XX_X
22._EET_400_[ECU]_Fld#_153_Plt#_2
__AG____AGACAGATGGX_XX_XX_XX_XX_X

Input profile: EET_400_[ECU] GC-01-066-4-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

1._EET_400_[ECU] GC-01-066-4-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

2._EET_400_[ECU] GC-01-066-4-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._EET_400_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

4._EET_400_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._EET_400_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

6._EET_400_[ECU]

98.8 %
40 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

7._EET_400_[ECU] RUQ_760

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._EET_400_[ECU]

97.1 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

9._EET_400_[ECU] RUQ_760

93.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._EET_400_[ECU] GC-01-066-4-02

73.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._EET_400_[ECU] GC-01-066-4-02

73.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

12._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._EET_400_[ECU]

70 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

16._EET_400_[ECU]

67.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

17._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

20._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

21._EET_400_[ECU] MITC-000396

42.4 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

22._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

41.1 %
79 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240