SNP Profiles of POUND 10 /B   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCAAGGGGCCCCCCCCGGTTTTTTAA
1._EET_400_[ECU]___
AACCAAGGGGCCCCCCCCGGTTTTTTAA
2._EET_400_[ECU]___
AACCAAGGGGCCCCCCCCGGTTTTTTAA
3._EET_400_[ECU]___
AACCAAGGGGCCCCCCCCGGTTTTTTAA
4._EET_400_[ECU]___
AACCAAGGGGCCCCCCCCGGTTTTTTAA
5._EET_400_[ECU]___
AACCAA________CCCCGG__TT____
6._EET_400_[ECU]___
AACCAA________CCCCGG__TT____
7._EET_400_[ECU]___
AACCAA________CCCCGG__TT____
8._EET_400_[ECU]___
AACCAA________CCCCGG__TT____
9._EET_400_[ECU]___
AACCAA________CCCCGG__TT____
10._EET_400_[ECU]___
AACCCC________CCCCGG__CC____
11._EET_400_[ECU]___
AACTACAGGGCTCCCCCTGGCTCTTTAT
12._EET_400_[ECU]___
AACTACAGGGCTCCCCCTGGCTCTTTAT
13._EET_400_[ECU]___
AACTACAGGGCTCCCCCTGGCTCTTTAT
14._EET_400_[ECU]___
AACTAC________CCCTGG__CT____
15._EET_400_[ECU]___
AACTAC________CCCTGG__CT____
16._EET_400_[ECU]___
AACTAC________CCCTGG__CT____
17._EET_400_[ECU]___
AACTAC________CCCTGG__CT____
18._EET_400_[ECU]___
AACTAC________CCCTGG__CT____
19._EET_400_[ECU]___
__CTAC________CCCTGG__CT____
20._EET_400_[ECU]___
__CTAC____TT__CC____CTTT____
21._EET_400_[ECU]___
AA__ACAGAG__AGGG__AGAGAGAGAT
22._EET_400_[ECU]___
AA__ACAAAG__GGGG__AGAGAGAAAT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGGGCCGGTTAATTGGTTAACCCGAA
1._EET_400_[ECU]___
AAGGGGCCGGTTAATTGGTTAACCCGAA
2._EET_400_[ECU]___
AAGGGGCCGGTTAATTGGTTAACCCGAA
3._EET_400_[ECU]___
AAGGGGCCGGTTAATTGGTTAACCCGAA
4._EET_400_[ECU]___
AAGGGGCCGGTTAATTGGTTAACCCGAA
5._EET_400_[ECU]___
__GG____GG________TTAA__CGAA
6._EET_400_[ECU]___
__GG____GG________TTAA__CGAA
7._EET_400_[ECU]___
__GG____GG________TTAA__CGAA
8._EET_400_[ECU]___
__GG____GG________TTAA__CGAA
9._EET_400_[ECU]___
__GG____GG________TTAA__CGAA
10._EET_400_[ECU]___
__GG____CG________ATAA__GGAA
11._EET_400_[ECU]___
AAGGCGCGCGCCAATTAGATAACGCGAA
12._EET_400_[ECU]___
AAGGCGCGCGCCAATTAGATAACGCGAA
13._EET_400_[ECU]___
AAGGCGCGCGCCAATTAGATAACGCGAA
14._EET_400_[ECU]___
__GG____CG________ATAA__CGAA
15._EET_400_[ECU]___
__GG____CG________ATAA__CGAA
16._EET_400_[ECU]___
__GG____CG________ATAA__CGAA
17._EET_400_[ECU]___
__GG____CG________ATAA__CGAA
18._EET_400_[ECU]___
__GG____CG________ATAA__CGAA
19._EET_400_[ECU]___
__GG____CG________ATAA__CGAA
20._EET_400_[ECU]___
______CC____________AACCCG__
21._EET_400_[ECU]___
ACGGGG__GGGGAAAAGGAAAACCGGAT
22._EET_400_[ECU]___
AAGGGG__CCGGAAAGGGATAACGCCAT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGGGGGCCGGGGGGTTAACCGGCCGG
1._EET_400_[ECU]___
TTGGGGGGCCGGGGGGTTAACCGGCCGG
2._EET_400_[ECU]___
TTGGGGGGCCGGGGGGTTAACCGGCCGG
3._EET_400_[ECU]___
TTGGGGGGCCGGGGGGTTAACCGGCCGG
4._EET_400_[ECU]___
TTGGGGGGCCGGGGGGTTAACCGGCCGG
5._EET_400_[ECU]___
______GG__GGGG____AA________
6._EET_400_[ECU]___
______GG__GGGG____AA________
7._EET_400_[ECU]___
______GG__GGGG____AA________
8._EET_400_[ECU]___
______GG__GGGG____AA________
9._EET_400_[ECU]___
______GG__GGGG____AA________
10._EET_400_[ECU]___
______GG__AGGG____AG________
11._EET_400_[ECU]___
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
12._EET_400_[ECU]___
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
13._EET_400_[ECU]___
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
14._EET_400_[ECU]___
______GG__AGGT____AG________
15._EET_400_[ECU]___
______GG__AAGT____AG________
16._EET_400_[ECU]___
______GG__AAGT____AG________
17._EET_400_[ECU]___
______GG__AAGT____AG________
18._EET_400_[ECU]___
______GG__AAGT____AG________
19._EET_400_[ECU]___
______GG__AAGT____AG________
20._EET_400_[ECU]___
____GGCGCCAAGT____AGCC____GG
21._EET_400_[ECU]___
AAAAAGCGACAAACCCAAAAGGGGGGCC
22._EET_400_[ECU]___
AAACAGCGACAAAACCAAAAGGGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCCCGGAAGGTTCCTTGG
1._EET_400_[ECU]___
TTTTAAGGAACCCCGGAAGGTTCCTTGG
2._EET_400_[ECU]___
TTTTAAGGAACCCCGGAAGGTTCCTTGG
3._EET_400_[ECU]___
TTTTAAGGAACCCCGGAAGGTTCCTTGG
4._EET_400_[ECU]___
TTTTAAGGAACCCCGGAAGGTTCCTTGG
5._EET_400_[ECU]___
__TT__________________CC____
6._EET_400_[ECU]___
__TT__________________CC____
7._EET_400_[ECU]___
__TT__________________CC____
8._EET_400_[ECU]___
__TT__________________CC____
9._EET_400_[ECU]___
__TT__________________CC____
10._EET_400_[ECU]___
__TT__________________CC____
11._EET_400_[ECU]___
TTTTAGAGAACCACGGGGGT__CCTTGG
12._EET_400_[ECU]___
TTTTAGAGAACCACGGGGGT__CCTTGG
13._EET_400_[ECU]___
TTTTAGAGAACCACGGGGGT__CCTTGG
14._EET_400_[ECU]___
__TT__________________CC____
15._EET_400_[ECU]___
__TT__________________CC____
16._EET_400_[ECU]___
__TT__________________CC____
17._EET_400_[ECU]___
__TT__________________CC____
18._EET_400_[ECU]___
__TT__________________CC____
19._EET_400_[ECU]___
__TT________________________
20._EET_400_[ECU]___
TT____AG____________CC__TT__
21._EET_400_[ECU]___
__AA__GGAGAG__GGAGCCGGGGAAGG
22._EET_400_[ECU]___
__AG__AAAAGG__AGAGCCGGGGAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
1._EET_400_[ECU]___
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
2._EET_400_[ECU]___
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
3._EET_400_[ECU]___
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
4._EET_400_[ECU]___
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
5._EET_400_[ECU]___
CC__TTAAGG__AAGGTTGG______AA
6._EET_400_[ECU]___
CC__TTAAGG__AAGGTTGG______AA
7._EET_400_[ECU]___
CC__TTAAGG__AAGGTTGG______AA
8._EET_400_[ECU]___
CC__TTAAGG__AAGGTTGG______AA
9._EET_400_[ECU]___
CC__TTAAGG__AAGGTTGG______AA
10._EET_400_[ECU]___
CC__CCACGG__ACAATTGG______AA
11._EET_400_[ECU]___
CCCCTTCCGGGGACAGGGGGAGTTCCAA
12._EET_400_[ECU]___
CCCCTTCCGGGGACAGGGGGAGTTCCAA
13._EET_400_[ECU]___
CCCCTTCCGGGGACAGGGGGAGTTCCAA
14._EET_400_[ECU]___
CC__TTCCGG__ACAGGGGG______AA
15._EET_400_[ECU]___
CC__TTCCGG__ACAGGGGG______AA
16._EET_400_[ECU]___
CC__TTCCGG__ACAGGGGG______AA
17._EET_400_[ECU]___
CC__TTCCGG__ACAGGGGG______AA
18._EET_400_[ECU]___
CC__TTCCGG__ACAGGGGG______AA
19._EET_400_[ECU]___
____TTCCGG__ACAGGGGG______AA
20._EET_400_[ECU]___
CCCCTTCC__GGACAGGGGGAG______
21._EET_400_[ECU]___
GGGGAGCCCGGGACAGCCACAA______
22._EET_400_[ECU]___
GGGGAGCCCGGGCCAGCCCCAG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
TTAAAACCCCAACCGGCCAACCCCTTCC
1._EET_400_[ECU]___
TTAAAACCCCAACCGGCCAACCCCTTCC
2._EET_400_[ECU]___
TTAAAACCCCAACCGGCCAACCCCTTCC
3._EET_400_[ECU]___
TTAAAACCCCAACCGGCCAACCCCTTCC
4._EET_400_[ECU]___
TTAAAACCCCAACCGGCCAACCCCTTCC
5._EET_400_[ECU]___
TT__________CCGG______CCTTCC
6._EET_400_[ECU]___
TT__________CCGG______CCTTCC
7._EET_400_[ECU]___
TT__________CCGG______CCTTCC
8._EET_400_[ECU]___
TT__________CCGG______CCTTCC
9._EET_400_[ECU]___
TT__________CCGG______CCTTCC
10._EET_400_[ECU]___
TT__________ACGG______TTCTCC
11._EET_400_[ECU]___
CTACAGACCCAGACCCCCATACCTTTCC
12._EET_400_[ECU]___
CTACAGACCCAGACCCCCATACCTTTCC
13._EET_400_[ECU]___
CTACAGACCCAGACCCCCATACCTTTCC
14._EET_400_[ECU]___
CT__________ACCC______CTTTCC
15._EET_400_[ECU]___
CT__________ACCC______CTTTCC
16._EET_400_[ECU]___
CT__________ACCC______CTTTCC
17._EET_400_[ECU]___
CT__________ACCC______CTTTCC
18._EET_400_[ECU]___
CT__________ACCC______CTTTCC
19._EET_400_[ECU]___
CT__________ACCC______CTTT__
20._EET_400_[ECU]___
____________ACCC____ACCT____
21._EET_400_[ECU]___
AGACAGACAC__ACCGGGATCCAGAG__
22._EET_400_[ECU]___
GGCCGGACAC__ACCGGGATCCAAAA__
 85 86 87 88 89 90 91 92       
_Input profile
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
1._EET_400_[ECU]___
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
2._EET_400_[ECU]___
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
3._EET_400_[ECU]___
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
4._EET_400_[ECU]___
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
5._EET_400_[ECU]___
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
6._EET_400_[ECU]___
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
7._EET_400_[ECU]___
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
8._EET_400_[ECU]___
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
9._EET_400_[ECU]___
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
10._EET_400_[ECU]___
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
11._EET_400_[ECU]___
TTAGCCCTGTCTTTGGX_XX_XX_XX_XX_XX_X
12._EET_400_[ECU]___
TTAGCCCTGTCTTTGGX_XX_XX_XX_XX_XX_X
13._EET_400_[ECU]___
TTAGCCCTGTCTTTGGX_XX_XX_XX_XX_XX_X
14._EET_400_[ECU]___
__AG__CTGTCT____X_XX_XX_XX_XX_XX_X
15._EET_400_[ECU]___
__AG__CTGTCT____X_XX_XX_XX_XX_XX_X
16._EET_400_[ECU]___
__AG__CTGTCT____X_XX_XX_XX_XX_XX_X
17._EET_400_[ECU]___
__AG__CTGTCT____X_XX_XX_XX_XX_XX_X
18._EET_400_[ECU]___
__AG__CTGTCT____X_XX_XX_XX_XX_XX_X
19._EET_400_[ECU]___
__AG__CCGT______X_XX_XX_XX_XX_XX_X
20._EET_400_[ECU]___
__AGCCCTGT______X_XX_XX_XX_XX_XX_X
21._EET_400_[ECU]___
AG____AGACAGATGGX_XX_XX_XX_XX_XX_X
22._EET_400_[ECU]___
AG____AGACAGATGGX_XX_XX_XX_XX_XX_X

Input profile: EET_400_[ECU] GC-01-066-4-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

1._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016

6._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

7._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

8._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

9._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

10._EET_400_[ECU]

75 %
38 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

11._EET_400_[ECU] GC-01-066-4-02

73.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

12._EET_400_[ECU] GC-01-066-4-02

73.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._EET_400_[ECU] GC-01-066-4-02

73.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._EET_400_[ECU] RUQ_760

68.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

16._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016

17._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

67.1 %
38 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

19._EET_400_[ECU]

65.2 %
33 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._EET_400_[ECU] RUQ_760

65 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

35.9 %
78 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

22._EET_400_[ECU] MITC-000396

32.1 %
78 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240