SNP Profiles of EET-400   View Data

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 Key

 1234567891011121314
_Input profile
AACCAAGGGGCCCCCCCCGGTTTTTTAA
1._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
2._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
3._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
4._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
5._EET_400_[ECU]
AACCAA________CCCCGG__TT____
6._EET_400_[ECU]
AACCAA________CCCCGG__TT____
7._EET_400_[ECU]
AACCAA________CCCCGG__TT____
8._EET_400_[ECU]
AACCAA________CCCCGG__TT____
9._EET_400_[ECU]
AACCAA________CCCCGG__TT____
10._EET_400_[ECU]
AACCCC________CCCCGG__CC____
11._GC-01-066-4-02
AACTACAGGGCTCCCCCTGGCTCTTTAT
12._GC-01-066-4-02
AACTACAGGGCTCCCCCTGGCTCTTTAT
13._GC-01-066-4-02
AACTACAGGGCTCCCCCTGGCTCTTTAT
14._RUQ_760
AACTAC________CCCTGG__CT____
15._EET_400_[ECU]
AACTAC________CCCTGG__CT____
16._EET_400_[ECU]
AACTAC________CCCTGG__CT____
17._EET_400_[ECU]
AACTAC________CCCTGG__CT____
18._EET_400_[ECU]
AACTAC________CCCTGG__CT____
19._EET_400_[ECU]
__CTAC________CCCTGG__CT____
20._RUQ_760
__CTAC____TT__CC____CTTT____
21._EET_400_[ECU]_Fld#_153_Plt#_2
AA__ACAGAG__AGGG__AGAGAGAGAT
22._MITC-000396
AA__ACAAAG__GGGG__AGAGAGAAAT
 1516171819202122232425262728
_Input profile
AAGGGGCCGGTTAATTGGTTAACCCGAA
1._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
2._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
3._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
4._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
5._EET_400_[ECU]
__GG____GG________TTAA__CGAA
6._EET_400_[ECU]
__GG____GG________TTAA__CGAA
7._EET_400_[ECU]
__GG____GG________TTAA__CGAA
8._EET_400_[ECU]
__GG____GG________TTAA__CGAA
9._EET_400_[ECU]
__GG____GG________TTAA__CGAA
10._EET_400_[ECU]
__GG____CG________ATAA__GGAA
11._GC-01-066-4-02
AAGGCGCGCGCCAATTAGATAACGCGAA
12._GC-01-066-4-02
AAGGCGCGCGCCAATTAGATAACGCGAA
13._GC-01-066-4-02
AAGGCGCGCGCCAATTAGATAACGCGAA
14._RUQ_760
__GG____CG________ATAA__CGAA
15._EET_400_[ECU]
__GG____CG________ATAA__CGAA
16._EET_400_[ECU]
__GG____CG________ATAA__CGAA
17._EET_400_[ECU]
__GG____CG________ATAA__CGAA
18._EET_400_[ECU]
__GG____CG________ATAA__CGAA
19._EET_400_[ECU]
__GG____CG________ATAA__CGAA
20._RUQ_760
______CC____________AACCCG__
21._EET_400_[ECU]_Fld#_153_Plt#_2
ACGGGG__GGGGAAAAGGAAAACCGGAT
22._MITC-000396
AAGGGG__CCGGAAAGGGATAACGCCAT
 2930313233343536373839404142
_Input profile
TTGGGGGGCCGGGGGGTTAACCGGCCGG
1._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
2._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
3._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
4._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
5._EET_400_[ECU]
______GG__GGGG____AA________
6._EET_400_[ECU]
______GG__GGGG____AA________
7._EET_400_[ECU]
______GG__GGGG____AA________
8._EET_400_[ECU]
______GG__GGGG____AA________
9._EET_400_[ECU]
______GG__GGGG____AA________
10._EET_400_[ECU]
______GG__AGGG____AG________
11._GC-01-066-4-02
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
12._GC-01-066-4-02
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
13._GC-01-066-4-02
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
14._RUQ_760
______GG__AGGT____AG________
15._EET_400_[ECU]
______GG__AAGT____AG________
16._EET_400_[ECU]
______GG__AAGT____AG________
17._EET_400_[ECU]
______GG__AAGT____AG________
18._EET_400_[ECU]
______GG__AAGT____AG________
19._EET_400_[ECU]
______GG__AAGT____AG________
20._RUQ_760
____GGCGCCAAGT____AGCC____GG
21._EET_400_[ECU]_Fld#_153_Plt#_2
AAAAAGCGACAAACCCAAAAGGGGGGCC
22._MITC-000396
AAACAGCGACAAAACCAAAAGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGAAGGTTCCTTGG
1._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCCTTGG
2._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCCTTGG
3._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCCTTGG
4._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCCTTGG
5._EET_400_[ECU]
__TT__________________CC____
6._EET_400_[ECU]
__TT__________________CC____
7._EET_400_[ECU]
__TT__________________CC____
8._EET_400_[ECU]
__TT__________________CC____
9._EET_400_[ECU]
__TT__________________CC____
10._EET_400_[ECU]
__TT__________________CC____
11._GC-01-066-4-02
TTTTAGAGAACCACGGGGGT__CCTTGG
12._GC-01-066-4-02
TTTTAGAGAACCACGGGGGT__CCTTGG
13._GC-01-066-4-02
TTTTAGAGAACCACGGGGGT__CCTTGG
14._RUQ_760
__TT__________________CC____
15._EET_400_[ECU]
__TT__________________CC____
16._EET_400_[ECU]
__TT__________________CC____
17._EET_400_[ECU]
__TT__________________CC____
18._EET_400_[ECU]
__TT__________________CC____
19._EET_400_[ECU]
__TT________________________
20._RUQ_760
TT____AG____________CC__TT__
21._EET_400_[ECU]_Fld#_153_Plt#_2
__AA__GGAGAG__GGAGCCGGGGAAGG
22._MITC-000396
__AG__AAAAGG__AGAGCCGGGGAAGG
 5758596061626364656667686970
_Input profile
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
1._GC-01-066-4-02
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
2._GC-01-066-4-02
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
3._GC-01-066-4-02
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
4._GC-01-066-4-02
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
5._EET_400_[ECU]
CC__TTAAGG__AAGGTTGG______AA
6._EET_400_[ECU]
CC__TTAAGG__AAGGTTGG______AA
7._EET_400_[ECU]
CC__TTAAGG__AAGGTTGG______AA
8._EET_400_[ECU]
CC__TTAAGG__AAGGTTGG______AA
9._EET_400_[ECU]
CC__TTAAGG__AAGGTTGG______AA
10._EET_400_[ECU]
CC__CCACGG__ACAATTGG______AA
11._GC-01-066-4-02
CCCCTTCCGGGGACAGGGGGAGTTCCAA
12._GC-01-066-4-02
CCCCTTCCGGGGACAGGGGGAGTTCCAA
13._GC-01-066-4-02
CCCCTTCCGGGGACAGGGGGAGTTCCAA
14._RUQ_760
CC__TTCCGG__ACAGGGGG______AA
15._EET_400_[ECU]
CC__TTCCGG__ACAGGGGG______AA
16._EET_400_[ECU]
CC__TTCCGG__ACAGGGGG______AA
17._EET_400_[ECU]
CC__TTCCGG__ACAGGGGG______AA
18._EET_400_[ECU]
CC__TTCCGG__ACAGGGGG______AA
19._EET_400_[ECU]
____TTCCGG__ACAGGGGG______AA
20._RUQ_760
CCCCTTCC__GGACAGGGGGAG______
21._EET_400_[ECU]_Fld#_153_Plt#_2
GGGGAGCCCGGGACAGCCACAA______
22._MITC-000396
GGGGAGCCCGGGCCAGCCCCAG______
 7172737475767778798081828384
_Input profile
TTAAAACCCCAACCGGCCAACCCCTTCC
1._GC-01-066-4-02
TTAAAACCCCAACCGGCCAACCCCTTCC
2._GC-01-066-4-02
TTAAAACCCCAACCGGCCAACCCCTTCC
3._GC-01-066-4-02
TTAAAACCCCAACCGGCCAACCCCTTCC
4._GC-01-066-4-02
TTAAAACCCCAACCGGCCAACCCCTTCC
5._EET_400_[ECU]
TT__________CCGG______CCTTCC
6._EET_400_[ECU]
TT__________CCGG______CCTTCC
7._EET_400_[ECU]
TT__________CCGG______CCTTCC
8._EET_400_[ECU]
TT__________CCGG______CCTTCC
9._EET_400_[ECU]
TT__________CCGG______CCTTCC
10._EET_400_[ECU]
TT__________ACGG______TTCTCC
11._GC-01-066-4-02
CTACAGACCCAGACCCCCATACCTTTCC
12._GC-01-066-4-02
CTACAGACCCAGACCCCCATACCTTTCC
13._GC-01-066-4-02
CTACAGACCCAGACCCCCATACCTTTCC
14._RUQ_760
CT__________ACCC______CTTTCC
15._EET_400_[ECU]
CT__________ACCC______CTTTCC
16._EET_400_[ECU]
CT__________ACCC______CTTTCC
17._EET_400_[ECU]
CT__________ACCC______CTTTCC
18._EET_400_[ECU]
CT__________ACCC______CTTTCC
19._EET_400_[ECU]
CT__________ACCC______CTTT__
20._RUQ_760
____________ACCC____ACCT____
21._EET_400_[ECU]_Fld#_153_Plt#_2
AGACAGACAC__ACCGGGATCCAGAG__
22._MITC-000396
GGCCGGACAC__ACCGGGATCCAAAA__
 8586878889909192      
_Input profile
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
1._GC-01-066-4-02
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
2._GC-01-066-4-02
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
3._GC-01-066-4-02
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
4._GC-01-066-4-02
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
5._EET_400_[ECU]
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
6._EET_400_[ECU]
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
7._EET_400_[ECU]
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
8._EET_400_[ECU]
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
9._EET_400_[ECU]
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
10._EET_400_[ECU]
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
11._GC-01-066-4-02
TTAGCCCTGTCTTTGGX_XX_XX_XX_XX_XX_X
12._GC-01-066-4-02
TTAGCCCTGTCTTTGGX_XX_XX_XX_XX_XX_X
13._GC-01-066-4-02
TTAGCCCTGTCTTTGGX_XX_XX_XX_XX_XX_X
14._RUQ_760
__AG__CTGTCT____X_XX_XX_XX_XX_XX_X
15._EET_400_[ECU]
__AG__CTGTCT____X_XX_XX_XX_XX_XX_X
16._EET_400_[ECU]
__AG__CTGTCT____X_XX_XX_XX_XX_XX_X
17._EET_400_[ECU]
__AG__CTGTCT____X_XX_XX_XX_XX_XX_X
18._EET_400_[ECU]
__AG__CTGTCT____X_XX_XX_XX_XX_XX_X
19._EET_400_[ECU]
__AG__CCGT______X_XX_XX_XX_XX_XX_X
20._RUQ_760
__AGCCCTGT______X_XX_XX_XX_XX_XX_X
21._EET_400_[ECU]_Fld#_153_Plt#_2
AG____AGACAGATGGX_XX_XX_XX_XX_XX_X
22._MITC-000396
AG____AGACAGATGGX_XX_XX_XX_XX_XX_X

Input profile: EET_400_[ECU] GC-01-066-4-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

1._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

7._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

8._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

9._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

10._EET_400_[ECU]

75 %
38 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

11._EET_400_[ECU] GC-01-066-4-02

73.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

12._EET_400_[ECU] GC-01-066-4-02

73.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._EET_400_[ECU] GC-01-066-4-02

73.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._EET_400_[ECU] RUQ_760

68.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

16._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

67.1 %
38 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

19._EET_400_[ECU]

65.2 %
33 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._EET_400_[ECU] RUQ_760

65 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

35.9 %
78 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

22._EET_400_[ECU] MITC-000396

32.1 %
78 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240