SNP Profiles of EET 400 [ECU]   View Data

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 Key

 1234567891011121314
_Input profile
AACCAAGGGGCCCCCCCCGGTTTTTTAA
1._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
2._EET_400_[ECU]
AACCAA____CCCCGG_TT__
3._EET_400_[ECU]
AACCAA____CCCCGG_TT__
4._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
5._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
6._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
7._EET_400_[ECU]
AACCAA____CCCCGG_TT__
8._EET_400_[ECU]
AACCAA____CCCCGG_TT__
9._EET_400_[ECU]
AACCAA____CCCCGG_TT__
10._EET_400_[ECU]
AACCCC____CCCCGG_CC__
11._GC-01-066-4-02
AACTACAGGGCTCCCCCTGGCTCTTTAT
12._GC-01-066-4-02
AACTACAGGGCTCCCCCTGGCTCTTTAT
13._GC-01-066-4-02
AACTACAGGGCTCCCCCTGGCTCTTTAT
14._RUQ_760
AACTAC____CCCTGG_CT__
15._EET_400_[ECU]
AACTAC____CCCTGG_CT__
16._EET_400_[ECU]
AACTAC____CCCTGG_CT__
17._EET_400_[ECU]
AACTAC____CCCTGG_CT__
18._EET_400_[ECU]
AACTAC____CCCTGG_CT__
19._EET_400_[ECU]
_CTAC____CCCTGG_CT__
20._RUQ_760
_CTAC__TT_CC__CTTT__
21._EET_400_[ECU]_Fld#_153_Plt#_2
AA_ACAGAG_AGGG_AGAGAGAGAT
22._MITC-000396
AA_ACAAAG_GGGG_AGAGAGAAAT
 1516171819202122232425262728
_Input profile
AAGGGGCCGGTTAATTGGTTAACCCGAA
1._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
2._EET_400_[ECU]
_GG__GG____TTAA_CGAA
3._EET_400_[ECU]
_GG__GG____TTAA_CGAA
4._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
5._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
6._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
7._EET_400_[ECU]
_GG__GG____TTAA_CGAA
8._EET_400_[ECU]
_GG__GG____TTAA_CGAA
9._EET_400_[ECU]
_GG__GG____TTAA_CGAA
10._EET_400_[ECU]
_GG__CG____ATAA_GGAA
11._GC-01-066-4-02
AAGGCGCGCGCCAATTAGATAACGCGAA
12._GC-01-066-4-02
AAGGCGCGCGCCAATTAGATAACGCGAA
13._GC-01-066-4-02
AAGGCGCGCGCCAATTAGATAACGCGAA
14._RUQ_760
_GG__CG____ATAA_CGAA
15._EET_400_[ECU]
_GG__CG____ATAA_CGAA
16._EET_400_[ECU]
_GG__CG____ATAA_CGAA
17._EET_400_[ECU]
_GG__CG____ATAA_CGAA
18._EET_400_[ECU]
_GG__CG____ATAA_CGAA
19._EET_400_[ECU]
_GG__CG____ATAA_CGAA
20._RUQ_760
___CC____-_AACCCG_
21._EET_400_[ECU]_Fld#_153_Plt#_2
ACGGGG_GGGGAAAAGGAAAACCGGAT
22._MITC-000396
AAGGGG_CCGGAAAGGGATAACGCCAT
 2930313233343536373839404142
_Input profile
TTGGGGGGCCGGGGGGTTAACCGGCCGG
1._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
2._EET_400_[ECU]
___GG_GGGG__AA____
3._EET_400_[ECU]
___GG_GGGG__AA____
4._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
5._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
6._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
7._EET_400_[ECU]
___GG_GGGG__AA____
8._EET_400_[ECU]
___GG_GGGG__AA____
9._EET_400_[ECU]
___GG_GGGG__AA____
10._EET_400_[ECU]
___GG_AGGG__AG____
11._GC-01-066-4-02
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
12._GC-01-066-4-02
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
13._GC-01-066-4-02
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
14._RUQ_760
___GG_AGGT__AG____
15._EET_400_[ECU]
___GG_AAGT__AG____
16._EET_400_[ECU]
___GG_AAGT__AG____
17._EET_400_[ECU]
___GG_AAGT__AG____
18._EET_400_[ECU]
___GG_AAGT__AG____
19._EET_400_[ECU]
___GG_AAGT__AG____
20._RUQ_760
__GGCGCCAAGT__AGCC__GG
21._EET_400_[ECU]_Fld#_153_Plt#_2
AAAAAGCGACAAACCCAAAAGGGGGGCC
22._MITC-000396
AAACAGCGACAAAACCAAAAGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGAAGGTTCTCCTT
1._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTT_CCTT
2._EET_400_[ECU]
_TT_________CTCC_
3._EET_400_[ECU]
_TT__________CC_
4._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCCCCTT
5._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCCCCTT
6._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCCCCTT
7._EET_400_[ECU]
_TT_________CCCC_
8._EET_400_[ECU]
_TT_________CCCC_
9._EET_400_[ECU]
_TT_________CCCC_
10._EET_400_[ECU]
_TT_________CTCC_
11._GC-01-066-4-02
TTTTAGAGAACCACGGGGGT_CTCCTT
12._GC-01-066-4-02
TTTTAGAGAACCACGGGGGT_CTCCTT
13._GC-01-066-4-02
TTTTAGAGAACCACGGGGGT_CTCCTT
14._RUQ_760
_TT_________CTCC_
15._EET_400_[ECU]
_TT_________CTCC_
16._EET_400_[ECU]
_TT_________CTCC_
17._EET_400_[ECU]
_TT_________CTCC_
18._EET_400_[ECU]
_TT_________CTCC_
19._EET_400_[ECU]
_TT_________CT__
20._RUQ_760
TT__AG______CCCT_TT
21._EET_400_[ECU]_Fld#_153_Plt#_2
_AA_GGAGAG_GGAGCCGGAAGGAA
22._MITC-000396
_AG_AAAAGG_AGAGCCGGAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
1._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
2._EET_400_[ECU]
_CC_TTAAGG_AAGGTTGG___
3._EET_400_[ECU]
_CC_TTAAGG_AAGGTTGG___
4._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
5._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
6._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
7._EET_400_[ECU]
_CC_TTAAGG_AAGGTTGG___
8._EET_400_[ECU]
_CC_TTAAGG_AAGGTTGG___
9._EET_400_[ECU]
_CC_TTAAGG_AAGGTTGG___
10._EET_400_[ECU]
_CC_CCACGG_ACAATTGG___
11._GC-01-066-4-02
GGCCCCTTCCGGGGACAGGGGGAGTTCC
12._GC-01-066-4-02
GGCCCCTTCCGGGGACAGGGGGAGTTCC
13._GC-01-066-4-02
GGCCCCTTCCGGGGACAGGGGGAGTTCC
14._RUQ_760
_CC_TTCCGG_ACAGGGGG___
15._EET_400_[ECU]
_CC_TTCCGG_ACAGGGGG___
16._EET_400_[ECU]
_CC_TTCCGG_ACAGGGGG___
17._EET_400_[ECU]
_CC_TTCCGG_ACAGGGGG___
18._EET_400_[ECU]
_CC_TTCCGG_ACAGGGGG___
19._EET_400_[ECU]
___TTCCGG_ACAGGGGG___
20._RUQ_760
-CCCCTTCC_GGACAGGGGGAG__
21._EET_400_[ECU]_Fld#_153_Plt#_2
GGGGGGAGCCCGGGACAGCCACAA__
22._MITC-000396
GGGGGGAGCCCGGGCCAGCCCCAG__
 7172737475767778798081828384
_Input profile
AATTAAAACCCCAACCGGCCAACCCCTT
1._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
2._EET_400_[ECU]
AATT_____CCGG___CCTT
3._EET_400_[ECU]
AATT_____CCGG___CCTT
4._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
5._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
6._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
7._EET_400_[ECU]
AATT_____CCGG___CCTT
8._EET_400_[ECU]
AATT_____CCGG___CCTT
9._EET_400_[ECU]
AATT_____CCGG___CCTT
10._EET_400_[ECU]
AATT_____ACGG___TTCT
11._GC-01-066-4-02
AACTACAGACCCAGACCCCCATACCTTT
12._GC-01-066-4-02
AACTACAGACCCAGACCCCCATACCTTT
13._GC-01-066-4-02
AACTACAGACCCAGACCCCCATACCTTT
14._RUQ_760
AACT_____ACCC___CTTT
15._EET_400_[ECU]
AACT_____ACCC___CTTT
16._EET_400_[ECU]
AACT_____ACCC___CTTT
17._EET_400_[ECU]
AACT_____ACCC___CTTT
18._EET_400_[ECU]
AACT_____ACCC___CTTT
19._EET_400_[ECU]
AACT_____ACCC___CTTT
20._RUQ_760
_______ACCC__ACCT_
21._EET_400_[ECU]_Fld#_153_Plt#_2
_AGACAGACAC_ACCGGGATCCAGAG
22._MITC-000396
_GGCCGGACAC_ACCGGGATCCAAAA
 858687888990919293     
_Input profile
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
1._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
2._EET_400_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
3._EET_400_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
4._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
5._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
6._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
7._EET_400_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
8._EET_400_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
9._EET_400_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
10._EET_400_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
11._GC-01-066-4-02
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
12._GC-01-066-4-02
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
13._GC-01-066-4-02
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
14._RUQ_760
CC_AG_CTGTCT__X_XX_XX_XX_XX_X
15._EET_400_[ECU]
CC_AG_CTGTCT__X_XX_XX_XX_XX_X
16._EET_400_[ECU]
CC_AG_CTGTCT__X_XX_XX_XX_XX_X
17._EET_400_[ECU]
CC_AG_CTGTCT__X_XX_XX_XX_XX_X
18._EET_400_[ECU]
CC_AG_CTGTCT__X_XX_XX_XX_XX_X
19._EET_400_[ECU]
__AG_CCGT___X_XX_XX_XX_XX_X
20._RUQ_760
__AGCCCTGT___X_XX_XX_XX_XX_X
21._EET_400_[ECU]_Fld#_153_Plt#_2
_AG__AGACAGATGGX_XX_XX_XX_XX_X
22._MITC-000396
_AG__AGACAGATGGX_XX_XX_XX_XX_X

Input profile: EET_400_[ECU] GC-01-066-4-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

2._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

3._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

4._EET_400_[ECU] GC-01-066-4-02

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._EET_400_[ECU] GC-01-066-4-02

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._EET_400_[ECU] GC-01-066-4-02

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._EET_400_[ECU]

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._EET_400_[ECU]

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

9._EET_400_[ECU]

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

10._EET_400_[ECU]

75.6 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

11._EET_400_[ECU] GC-01-066-4-02

73.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

12._EET_400_[ECU] GC-01-066-4-02

73.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._EET_400_[ECU] GC-01-066-4-02

73.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._EET_400_[ECU] RUQ_760

69.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_400_[ECU]

67.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

16._EET_400_[ECU]

67.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._EET_400_[ECU]

67.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

67.9 %
39 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

19._EET_400_[ECU]

66.2 %
34 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._EET_400_[ECU] RUQ_760

65.9 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

35.4 %
79 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

22._EET_400_[ECU] MITC-000396

31.6 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240