SNP Profiles of EET 400 [ECU]   View Data

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 Key

 1234567891011121314
_Input profile
AACCAAGGGGCCCCCCCCGGTTTTTTAA
1._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
2._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
3._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
4._EET_400_[ECU]
AACCAA________CCCCGG__TT____
5._EET_400_[ECU]
AACCAA________CCCCGG__TT____
6._EET_400_[ECU]
AACCAA________CCCCGG__TT____
7._EET_400_[ECU]
AACCAA________CCCCGG__TT____
8._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
9._EET_400_[ECU]
AACCAA________CCCCGG__TT____
10._EET_400_[ECU]
AACCCC________CCCCGG__CC____
11._GC-01-066-4-02
AACTACAGGGCTCCCCCTGGCTCTTTAT
12._GC-01-066-4-02
AACTACAGGGCTCCCCCTGGCTCTTTAT
13._GC-01-066-4-02
AACTACAGGGCTCCCCCTGGCTCTTTAT
14._RUQ_760
AACTAC________CCCTGG__CT____
15._EET_400_[ECU]
AACTAC________CCCTGG__CT____
16._EET_400_[ECU]
AACTAC________CCCTGG__CT____
17._EET_400_[ECU]
AACTAC________CCCTGG__CT____
18._EET_400_[ECU]
AACTAC________CCCTGG__CT____
19._EET_400_[ECU]
__CTAC________CCCTGG__CT____
20._RUQ_760
__CTAC____TT__CC____CTTT____
21._EET_400_[ECU]_Fld#_153_Plt#_2
AA__ACAGAG__AGGG__AGAGAGAGAT
22._MITC-000396
AA__ACAAAG__GGGG__AGAGAGAAAT
 1516171819202122232425262728
_Input profile
AAGGGGCCGGTTAATTGGTTAACCCGAA
1._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
2._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
3._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
4._EET_400_[ECU]
__GG____GG________TTAA__CGAA
5._EET_400_[ECU]
__GG____GG________TTAA__CGAA
6._EET_400_[ECU]
__GG____GG________TTAA__CGAA
7._EET_400_[ECU]
__GG____GG________TTAA__CGAA
8._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
9._EET_400_[ECU]
__GG____GG________TTAA__CGAA
10._EET_400_[ECU]
__GG____CG________ATAA__GGAA
11._GC-01-066-4-02
AAGGCGCGCGCCAATTAGATAACGCGAA
12._GC-01-066-4-02
AAGGCGCGCGCCAATTAGATAACGCGAA
13._GC-01-066-4-02
AAGGCGCGCGCCAATTAGATAACGCGAA
14._RUQ_760
__GG____CG________ATAA__CGAA
15._EET_400_[ECU]
__GG____CG________ATAA__CGAA
16._EET_400_[ECU]
__GG____CG________ATAA__CGAA
17._EET_400_[ECU]
__GG____CG________ATAA__CGAA
18._EET_400_[ECU]
__GG____CG________ATAA__CGAA
19._EET_400_[ECU]
__GG____CG________ATAA__CGAA
20._RUQ_760
______CC____________AACCCG__
21._EET_400_[ECU]_Fld#_153_Plt#_2
ACGGGG__GGGGAAAAGGAAAACCGGAT
22._MITC-000396
AAGGGG__CCGGAAAGGGATAACGCCAT
 2930313233343536373839404142
_Input profile
TTGGGGGGCCGGGGGGTTAACCGGCCGG
1._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
2._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
3._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
4._EET_400_[ECU]
______GG__GGGG____AA________
5._EET_400_[ECU]
______GG__GGGG____AA________
6._EET_400_[ECU]
______GG__GGGG____AA________
7._EET_400_[ECU]
______GG__GGGG____AA________
8._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
9._EET_400_[ECU]
______GG__GGGG____AA________
10._EET_400_[ECU]
______GG__AGGG____AG________
11._GC-01-066-4-02
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
12._GC-01-066-4-02
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
13._GC-01-066-4-02
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
14._RUQ_760
______GG__AGGT____AG________
15._EET_400_[ECU]
______GG__AAGT____AG________
16._EET_400_[ECU]
______GG__AAGT____AG________
17._EET_400_[ECU]
______GG__AAGT____AG________
18._EET_400_[ECU]
______GG__AAGT____AG________
19._EET_400_[ECU]
______GG__AAGT____AG________
20._RUQ_760
____GGCGCCAAGT____AGCC____GG
21._EET_400_[ECU]_Fld#_153_Plt#_2
AAAAAGCGACAAACCCAAAAGGGGGGCC
22._MITC-000396
AAACAGCGACAAAACCAAAAGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGAAGGTTCCCCTT
1._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCCCCTT
2._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCCCCTT
3._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTT__CCTT
4._EET_400_[ECU]
__TT__________________CCCC__
5._EET_400_[ECU]
__TT__________________CCCC__
6._EET_400_[ECU]
__TT__________________CCCC__
7._EET_400_[ECU]
__TT____________________CC__
8._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCTCCTT
9._EET_400_[ECU]
__TT__________________CTCC__
10._EET_400_[ECU]
__TT__________________CTCC__
11._GC-01-066-4-02
TTTTAGAGAACCACGGGGGT__CTCCTT
12._GC-01-066-4-02
TTTTAGAGAACCACGGGGGT__CTCCTT
13._GC-01-066-4-02
TTTTAGAGAACCACGGGGGT__CTCCTT
14._RUQ_760
__TT__________________CTCC__
15._EET_400_[ECU]
__TT__________________CTCC__
16._EET_400_[ECU]
__TT__________________CTCC__
17._EET_400_[ECU]
__TT__________________CTCC__
18._EET_400_[ECU]
__TT__________________CTCC__
19._EET_400_[ECU]
__TT__________________CT____
20._RUQ_760
TT____AG____________CCCT__TT
21._EET_400_[ECU]_Fld#_153_Plt#_2
__AA__GGAGAG__GGAGCCGGAAGGAA
22._MITC-000396
__AG__AAAAGG__AGAGCCGGAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
1._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
2._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
3._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
4._EET_400_[ECU]
__CC__TTAAGG__AAGGTTGG______
5._EET_400_[ECU]
__CC__TTAAGG__AAGGTTGG______
6._EET_400_[ECU]
__CC__TTAAGG__AAGGTTGG______
7._EET_400_[ECU]
__CC__TTAAGG__AAGGTTGG______
8._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
9._EET_400_[ECU]
__CC__TTAAGG__AAGGTTGG______
10._EET_400_[ECU]
__CC__CCACGG__ACAATTGG______
11._GC-01-066-4-02
GGCCCCTTCCGGGGACAGGGGGAGTTCC
12._GC-01-066-4-02
GGCCCCTTCCGGGGACAGGGGGAGTTCC
13._GC-01-066-4-02
GGCCCCTTCCGGGGACAGGGGGAGTTCC
14._RUQ_760
__CC__TTCCGG__ACAGGGGG______
15._EET_400_[ECU]
__CC__TTCCGG__ACAGGGGG______
16._EET_400_[ECU]
__CC__TTCCGG__ACAGGGGG______
17._EET_400_[ECU]
__CC__TTCCGG__ACAGGGGG______
18._EET_400_[ECU]
__CC__TTCCGG__ACAGGGGG______
19._EET_400_[ECU]
______TTCCGG__ACAGGGGG______
20._RUQ_760
__CCCCTTCC__GGACAGGGGGAG____
21._EET_400_[ECU]_Fld#_153_Plt#_2
GGGGGGAGCCCGGGACAGCCACAA____
22._MITC-000396
GGGGGGAGCCCGGGCCAGCCCCAG____
 7172737475767778798081828384
_Input profile
AATTAAAACCCCAACCGGCCAACCCCTT
1._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
2._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
3._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
4._EET_400_[ECU]
AATT__________CCGG______CCTT
5._EET_400_[ECU]
AATT__________CCGG______CCTT
6._EET_400_[ECU]
AATT__________CCGG______CCTT
7._EET_400_[ECU]
AATT__________CCGG______CCTT
8._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
9._EET_400_[ECU]
AATT__________CCGG______CCTT
10._EET_400_[ECU]
AATT__________ACGG______TTCT
11._GC-01-066-4-02
AACTACAGACCCAGACCCCCATACCTTT
12._GC-01-066-4-02
AACTACAGACCCAGACCCCCATACCTTT
13._GC-01-066-4-02
AACTACAGACCCAGACCCCCATACCTTT
14._RUQ_760
AACT__________ACCC______CTTT
15._EET_400_[ECU]
AACT__________ACCC______CTTT
16._EET_400_[ECU]
AACT__________ACCC______CTTT
17._EET_400_[ECU]
AACT__________ACCC______CTTT
18._EET_400_[ECU]
AACT__________ACCC______CTTT
19._EET_400_[ECU]
AACT__________ACCC______CTTT
20._RUQ_760
______________ACCC____ACCT__
21._EET_400_[ECU]_Fld#_153_Plt#_2
__AGACAGACAC__ACCGGGATCCAGAG
22._MITC-000396
__GGCCGGACAC__ACCGGGATCCAAAA
 858687888990919293     
_Input profile
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
1._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
2._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
3._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
4._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
5._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
6._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
9._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._EET_400_[ECU]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
11._GC-01-066-4-02
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
12._GC-01-066-4-02
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
13._GC-01-066-4-02
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
14._RUQ_760
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
15._EET_400_[ECU]
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
16._EET_400_[ECU]
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
17._EET_400_[ECU]
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
18._EET_400_[ECU]
CC__AG__CTGTCT____X_XX_XX_XX_XX_X
19._EET_400_[ECU]
____AG__CCGT______X_XX_XX_XX_XX_X
20._RUQ_760
____AGCCCTGT______X_XX_XX_XX_XX_X
21._EET_400_[ECU]_Fld#_153_Plt#_2
__AG____AGACAGATGGX_XX_XX_XX_XX_X
22._MITC-000396
__AG____AGACAGATGGX_XX_XX_XX_XX_X

Input profile: EET_400_[ECU] GC-01-066-4-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._EET_400_[ECU] GC-01-066-4-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._EET_400_[ECU] GC-01-066-4-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

4._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

6._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

7._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

8._EET_400_[ECU] GC-01-066-4-02

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._EET_400_[ECU]

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

10._EET_400_[ECU]

74.4 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

11._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

12._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._EET_400_[ECU] RUQ_760

67.9 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

16._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

66.7 %
39 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

19._EET_400_[ECU]

64.7 %
34 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._EET_400_[ECU] RUQ_760

64.6 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

35.4 %
79 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

22._EET_400_[ECU] MITC-000396

31.6 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240