SNP Profiles of ICS-43   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
5._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
6._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
7._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
8._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
9._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
10._ICS_43
AACCCC________CCCCGG__CC____
11._ICS_43
AACCCC________CCCCGG__CC____
12._ICS_43
AACCCC________CCCCGG__CC____
13._ICS_43
AACCCC________CCCCGG__CC____
14._ICS_43
AACCCC________CCCCGG__CC____
15._ICS_43
AACCCC________CCCCGG__CC____
16._ICS_43
AACCCC________CCCCGG__CC____
17._ICS_43
AACCCC________CCCCGG__CC____
18._ICS_43
AACCCC________CCCCGG__CC____
19._ICS_43
AACCCC________CCCCGG__CC____
20._ICS43
____AA________CT______CC____
21._RUQ_144
AATTAA________CTCTAG__CC____
22._RUQ_144
__TTAA____CC__CT____CTCC____
23._ICS_43
AATTAA________CTCTAG__CC____
24._RUQ_144
____AA____CC________________
25._RUQ_144
AA__AAAGAG__GGAG__GGAGGGAGAT
26._ICS_43_Fld#_164_Plt#_1
AA__AAAGAG__GGAG__GGAGGGAGAT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGAAAACCGGAA
1._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
2._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
3._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
4._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
5._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
6._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
7._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
8._GC-01-051-3-06
CCGGGGCCGGTTAA__GGAAAACCGGAA
9._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
10._ICS_43
__GG____GG________AAAA__GGAA
11._ICS_43
__GG____GG________AAAA__GGAA
12._ICS_43
__GG____GG________AAAA__GGAA
13._ICS_43
__GG____GG________AAAA__GGAA
14._ICS_43
__GG____GG________AAAA__GGAA
15._ICS_43
__GG____GG________AAAA__GGAA
16._ICS_43
__GG____GG________AAAA__GGAA
17._ICS_43
__GG____GG________AAAA__GGAA
18._ICS_43
__GG____GG________AAAA__GGAA
19._ICS_43
__GG____GG________AAAA__GGAA
20._ICS43
______CG__CT____GG__AACCCC__
21._RUQ_144
________GG________TTAA__GGAA
22._RUQ_144
______CG________GG__AACCGG__
23._ICS_43
__AA____GG________TTAA__GGAA
24._RUQ_144
__AATT__________________GG__
25._RUQ_144
CCAACC__GGAGAGAAGGTTAAGGCCAA
26._ICS_43_Fld#_164_Plt#_1
CCAACC__GGAGAGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
8._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
9._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
10._ICS_43
______CC__GGTT____GG________
11._ICS_43
______CC__GGTT____GG________
12._ICS_43
______CC__GGTT____GG________
13._ICS_43
______CC__GGTT____GG________
14._ICS_43
______CC__GGTT____GG________
15._ICS_43
______CC__GGTT____GG________
16._ICS_43
______CC__GGTT____GG________
17._ICS_43
______CC__GGTT____GG________
18._ICS_43
______CC__GGTT____GG________
19._ICS_43
______CC__GGTT____GG________
20._ICS43
____AGCC________GT__CT______
21._RUQ_144
______CC__AAGT____AG________
22._RUQ_144
____AGCCACAAGT____AGCT____GT
23._ICS_43
______CC__AAGT____AG________
24._RUQ_144
______CC__AA________CT______
25._RUQ_144
AACCAGCCACAAACCCACAGAGAAGGAC
26._ICS_43_Fld#_164_Plt#_1
AACCAGCCACAAACCCACAGAGAAGGAC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
10._ICS_43
__TT__________________TTCC__
11._ICS_43
__TT__________________TTCC__
12._ICS_43
__TT__________________TTCC__
13._ICS_43
__TT__________________TTCC__
14._ICS_43
__TT__________________TTCC__
15._ICS_43
__TT__________________TTCC__
16._ICS_43
__TT__________________TTCC__
17._ICS_43
__TT__________________TTCC__
18._ICS_43
__TT__________________TTCC__
19._ICS_43
__TT__________________TTCC__
20._ICS43
AT__AG________________CT____
21._RUQ_144
__CC__________________CTCT__
22._RUQ_144
AT____AG____________CTCT__GT
23._ICS_43
__CC__________________CTCT__
24._RUQ_144
______AG____________________
25._RUQ_144
__GG__AGAGGG__GGGGACAGAGAGAC
26._ICS_43_Fld#_164_Plt#_1
__GG__AGAGGG__GGGGACAGAGAGAC
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
8._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
9._GC-01-051-3-06
GGCCCCCCAAGGGGAA__GGGGAACCCC
10._ICS_43
__CC__CCAAGG__AAGGGGGG______
11._ICS_43
__CC__CCAAGG__AAGGGGGG______
12._ICS_43
__CC__CCAAGG__AAGGGGGG______
13._ICS_43
__CC__CCAAGG__AAGGGGGG______
14._ICS_43
__CC__CCAAGG__AAGGGGGG______
15._ICS_43
__CC__CCAAGG__AAGGGGGG______
16._ICS_43
__CC__CCAAGG__AAGGGGGG______
17._ICS_43
__CC__CCAAGG__AAGGGGGG______
18._ICS_43
__CC__CCAAGG__AAGGGGGG______
19._ICS_43
__CC__CCAAGG__AA__GGGG______
20._ICS43
__CGCT__AC__AGACGG________CC
21._RUQ_144
__CG__CTACGG__ACGGTTGT______
22._RUQ_144
__CGCTCTAC__AGACGGTTGTAG____
23._ICS_43
______CTACGG__ACGGTTGT______
24._RUQ_144
GG____________ACGG__GTAG____
25._RUQ_144
GGCGAGAGACGGAGACGGAAACAG____
26._ICS_43_Fld#_164_Plt#_1
GGCGAGAGACGGAGACGGAAACAG____
 7172737475767778798081828384
_Input profile
AACCAAAGCCCCGGAACCCCTTAACCCC
1._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
2._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
3._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
4._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
5._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
6._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
7._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
8._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
9._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
10._ICS_43
AACC__________AACC______CCCC
11._ICS_43
AACC__________AACC______CCCC
12._ICS_43
AACC__________AACC______CCCC
13._ICS_43
AACC__________AACC______CCCC
14._ICS_43
AACC__________AACC______CCCC
15._ICS_43
AACC__________AACC______CCCC
16._ICS_43
AACC__________AACC______CCCC
17._ICS_43
AACC__________AACC______CCCC
18._ICS_43
AACC__________AACC______CCCC
19._ICS_43
AACC__________AACC______CCCC
20._ICS43
________________CC________CT
21._RUQ_144
AGTT__________CCGG______TTCT
22._RUQ_144
______________CCGG____CCTT__
23._ICS_43
AGTT__________CCGG______TTCT
24._RUQ_144
AG____________CCGG____CC____
25._RUQ_144
__AACCAGCCAA__CCCCGGATCCAAAG
26._ICS_43_Fld#_164_Plt#_1
__AACCAGCCAA__CCCCGGATCCAAAG
 8586878889909192      
_Input profile
CCCCGGCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-051-3-06
CCCCGGCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-051-3-06
CCCCGGCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-051-3-06
CCCCGGCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-051-3-06
CCCCGGCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-051-3-06
CCCCGGCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-051-3-06
CCCCGGCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-051-3-06
CCCCGGCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-01-051-3-06
CCCCGGCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-01-051-3-06
CCCC__CCTTTTAAGGX_XX_XX_XX_XX_XX_X
10._ICS_43
CC__GGCCTTTT____X_XX_XX_XX_XX_XX_X
11._ICS_43
CC__GGCCTTTT____X_XX_XX_XX_XX_XX_X
12._ICS_43
CC__GGCCTTTT____X_XX_XX_XX_XX_XX_X
13._ICS_43
CC__GGCCTTTT____X_XX_XX_XX_XX_XX_X
14._ICS_43
CC__GGCCTTTT____X_XX_XX_XX_XX_XX_X
15._ICS_43
CC__GGCCTTTT____X_XX_XX_XX_XX_XX_X
16._ICS_43
CC__GGCCTTTT____X_XX_XX_XX_XX_XX_X
17._ICS_43
CC__GGCCTTTT____X_XX_XX_XX_XX_XX_X
18._ICS_43
CC__GGCCTTTT____X_XX_XX_XX_XX_XX_X
19._ICS_43
CC____CCTTTT____X_XX_XX_XX_XX_XX_X
20._ICS43
________________X_XX_XX_XX_XX_XX_X
21._RUQ_144
CT__AGCTGTTT____X_XX_XX_XX_XX_XX_X
22._RUQ_144
____AGCTGT______X_XX_XX_XX_XX_XX_X
23._ICS_43
CT__AGCTGTTT____X_XX_XX_XX_XX_XX_X
24._RUQ_144
CT______GT______X_XX_XX_XX_XX_XX_X
25._RUQ_144
__AA__AGAAAATTGGX_XX_XX_XX_XX_XX_X
26._ICS_43_Fld#_164_Plt#_1
__AA__AGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: ICS_43 GC-01-051-3-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

1._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

2._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

3._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

6._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

7._ICS_43 GC-01-051-3-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._ICS_43 GC-01-051-3-06

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._ICS_43 GC-01-051-3-06

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

11._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

13._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

14._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

15._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

16._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

17._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

18._ICS_43

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

19._ICS_43

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

20._ICS_43 ICS43

62 %
25 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

21._ICS_43 RUQ_144

50 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._ICS_43 RUQ_144

50 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._ICS_43

48.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

24._ICS_43 RUQ_144

45 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._ICS_43 RUQ_144

31 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

26._ICS_43 ICS_43_Fld#_164_Plt#_1

31 %
79 shared markers

USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240