SNP Profiles of UF 676   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTACAGAGCTCCCTCTGGCTCCCT
1._UF_667___
AAAACTACAGAGCTCCCTCTGGCTCCCT
2._UF_667___
AAAACTACAGAGCTCCCTCTGGCTCCCT
3._UF_667___
AAAACTACAGAGCTCCCTCTGGCTCCCT
4._UF_667___
AAAACTACAGAGCTCCCTCTGGCTCCCT
5._UF_667___
AAAACTACAGAGCTCC__CTGGCTCCCT
6._UF_667___
AAAACTACAGAGCTCC__CTGGCTCCCT
7._UF_667___
AAAACTAC________CTCTGG__CC__
8._UF_667___
AAAACTAC________CTCTGG__CC__
9._UF_667___
AAAACTAC________CTCTGG__CC__
10._UF_667___
AAAACTAC________CTCTGG__CC__
11._UF_667___
AAAACTAC________CTCTGG__CC__
12._UF_667___
AAAACTAC__________CTGG__CC__
13._UF_667___
AAAACTAC__________CTGG__CC__
14._UF_667___
AAAACTAC________CTCTGG__CC__
15._UF_667___
AAAACTAC________CTCTGG__CC__
16._UF_667___
AAAACTAC________CTCTGG__CC__
17._UF_667___
AAAACTAC________CTCTGG__CC__
18._UF_667___
____CTAA____CT__CT____CTCC__
19._UF_667___
______AC____CT______________
20._UF_667___
AACCCCCC________CCCCGG__CC__
21._UF_667___
AAAA__ACAGAG__GGAG__GGAGGGAG
22._UF_667___
AAAA__ACAGAG__GGAG__GGAGGGAG
23._UF_667___
AAAC__ACAGGG__GGGG__GGAGAGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._UF_667___
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._UF_667___
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._UF_667___
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._UF_667___
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._UF_667___
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._UF_667___
ATCCAAAAGGCGGGCTAGTTAGATATCG
7._UF_667___
______AA____GG________ATAT__
8._UF_667___
______AA____GG________ATAT__
9._UF_667___
______AA____GG________ATAT__
10._UF_667___
______AA____GG________ATAT__
11._UF_667___
______AA____GG________ATAT__
12._UF_667___
______AA____GG________ATAT__
13._UF_667___
______AA____GG________ATAT__
14._UF_667___
______AA____GG________ATAT__
15._UF_667___
______AA____GG________ATAT__
16._UF_667___
______AA____GG________ATAT__
17._UF_667___
______AA____GG________ATAT__
18._UF_667___
__________CG________AG__ATCG
19._UF_667___
______AATT__________________
20._UF_667___
______GG____CG________ATAA__
21._UF_667___
ATCCAGAACC__GGAGAGAAAGATATCG
22._UF_667___
ATCCAGAACC__GGAGAGAAAGATATCG
23._UF_667___
TTACGGAGCG__GGAGAGAGAGATATCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACTGTAGCCACAGGTGGGTAGCCAA
1._UF_667___
CGAACTGTAGCCACAGGTGGGTAGCCAA
2._UF_667___
CGAACTGTAGCCACAGGTGGGTAGCCAA
3._UF_667___
CGAACTGTAGCCACAGGTGGGTAGCCAA
4._UF_667___
CGAACTGTAGCCACAGGTGGGTAGCCAA
5._UF_667___
CGAACTGTAGCCACAGGTGGGTAGCCAA
6._UF_667___
CGAACTGTAGCCACAGGTGGGTAGCCAA
7._UF_667___
CGAA______CC__AGGT____AG____
8._UF_667___
CGAA______CC__AGGT____AG____
9._UF_667___
CGAA______CC__AGGT____AG____
10._UF_667___
CGAA______CC__AGGT____AG____
11._UF_667___
CGAA______CC__AGGT____AG____
12._UF_667___
CGAA______CC__AGGT____AG____
13._UF_667___
CGAA______CC__AGGT____AG____
14._UF_667___
CGAA______CC__AGGT____AG____
15._UF_667___
CGAA______CC__AGGT____AG____
16._UF_667___
CGAA______CC__AGGT____AG____
17._UF_667___
CGAA______CC__AGGT____AG____
18._UF_667___
CG______AGCCACAGGT____AGCC__
19._UF_667___
CG________CC__AG________CC__
20._UF_667___
GGAA______CG__AGGT____GG____
21._UF_667___
CGAAAGACAGCCACAGACCCACAGGGAA
22._UF_667___
CGAAAGACAGCCACAGACCCACAGGGAA
23._UF_667___
GGATAGAAGGCGACAAACCCACAGGGAG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGTATCCAGAGAGCTCCGGGGGTTTCT
1._UF_667___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
2._UF_667___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
3._UF_667___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
4._UF_667___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
5._UF_667___
CCGTATCCAGAG__CTCCGGGGGTTTCT
6._UF_667___
CCGTATCCAGAGAGCTCCGGGGGTTTCT
7._UF_667___
______CC__________________CT
8._UF_667___
______CC__________________CT
9._UF_667___
______CC__________________CT
10._UF_667___
______CC__________________CT
11._UF_667___
______CC__________________CT
12._UF_667___
______CC__________________CT
13._UF_667___
______CC__________________CT
14._UF_667___
______CC__________________CT
15._UF_667___
______CC__________________CT
16._UF_667___
______CC__________________CT
17._UF_667___
______CC__________________CT
18._UF_667___
__GTAT____AG____________CTCT
19._UF_667___
__________AG________________
20._UF_667___
______TT__________________CT
21._UF_667___
GGAC__GG__AGAGAG__GGGGACAGAG
22._UF_667___
GGAC__GG__AGAGAG__GGGGACAGAG
23._UF_667___
GGAC__AG__AAAAAG__GGAGACGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CTGTAGCTCTACGGAGACAGGTGTAGCT
1._UF_667___
CTGTAGCTCTACGGAGACAGGTGTAGCT
2._UF_667___
CTGTAGCTCTACGGAGACAGGTGTAGCT
3._UF_667___
CTGTAGCTCTACGGAGACAGGTGTAGCT
4._UF_667___
CTGTAGCTCTACGGAGACAGGTGTAGCT
5._UF_667___
CTGTAGCTCTACGGAGACAGGTGTAGCT
6._UF_667___
CTGT____CTACGGAGACAGGTGTAGCT
7._UF_667___
CT______CTACGG__ACAGGTGT____
8._UF_667___
CT______CTACGG__ACAGGTGT____
9._UF_667___
CT______CTACGG__ACAGGTGT____
10._UF_667___
CT______CTACGG__ACAGGTGT____
11._UF_667___
CT______CTACGG__ACAGGTGT____
12._UF_667___
CT______CTACGG__ACAGGTGT____
13._UF_667___
CT______CTACGG__ACAGGTGT____
14._UF_667___
CT______CTACGG__ACAGGTGT____
15._UF_667___
CT______CTACGG__ACAGGTGT____
16._UF_667___
CT______CTACGG__ACAGGTGT____
17._UF_667___
CT______CTACGG__ACAGGTGT____
18._UF_667___
__GT__CTCTAC__AGACAGGTGTAG__
19._UF_667___
____AG__________ACAG__GTAG__
20._UF_667___
CC______CTAAGG__ACAGGGGG____
21._UF_667___
AGACAGAGAGACGGAGACAGACACAG__
22._UF_667___
AGACAGAGAGACGGAGACAGACACAG__
23._UF_667___
GGACGGAGAGAAGGGGCCAAACCCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTACAGACAAAGCCCGCTATACCT
1._UF_667___
CCGGTTACAGACAAAGCCCGCTATACCT
2._UF_667___
CCGGTTACAGACAAAGCCCGCTATACCT
3._UF_667___
CCGGTTACAGACAAAGCCCGCTATACCT
4._UF_667___
CCGGTTACAGACAAAGCCCGCTATACCT
5._UF_667___
CCGGTTACAGACAAAGCCCGCTATACCT
6._UF_667___
CCGGTTACAGACAAAGCCCGCTATACCT
7._UF_667___
__GGTT__________CCCG______CT
8._UF_667___
__GGTT__________CCCG______CT
9._UF_667___
__GGTT__________CCCG______CT
10._UF_667___
__GGTT__________CCCG______CT
11._UF_667___
__GGTT__________CCCG______CT
12._UF_667___
__GGTT__________CCCG______CT
13._UF_667___
__GGTT__________CCCG______CT
14._UF_667___
__AGTT__________CCCG______CT
15._UF_667___
__AGTT__________CCCG______CT
16._UF_667___
__AGTT__________CCCG______CT
17._UF_667___
__AGTT__________CCCG______CT
18._UF_667___
________________CCCG____ACCT
19._UF_667___
__AG____________ACCG____AC__
20._UF_667___
__AACT__________AACG______TT
21._UF_667___
____AAACAGACAA__CCCGAGATACAG
22._UF_667___
____AAACAGACAA__CCCGAGATACAG
23._UF_667___
____AGAAAAACAA__ACCCAGATCCAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
1._UF_667___
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
2._UF_667___
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
3._UF_667___
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
4._UF_667___
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
5._UF_667___
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
6._UF_667___
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
7._UF_667___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
8._UF_667___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
9._UF_667___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
10._UF_667___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
11._UF_667___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
12._UF_667___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
13._UF_667___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
14._UF_667___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
15._UF_667___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
16._UF_667___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
17._UF_667___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
18._UF_667___
______AGCCCTGT______X_XX_XX_XX_X
19._UF_667___
__CT____CT__GT______X_XX_XX_XX_X
20._UF_667___
CCCC__AG__CCTTTT____X_XX_XX_XX_X
21._UF_667___
AG__AA____AGAAAAATGGX_XX_XX_XX_X
22._UF_667___
AG__AA____AGAAAAATGGX_XX_XX_XX_X
23._UF_667___
AA__AG____AGAAAGAAGGX_XX_XX_XX_X

Input profile: UF_667 GC-01-029-2-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

1._UF_667 GC-01-029-2-06

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._UF_667 GC-01-029-2-06

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._UF_667 GC-01-029-2-06

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

4._UF_667 GC-01-029-2-06

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._UF_667 GC-01-029-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._UF_667 GC-01-029-2-06

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 5 > FP
 Dapeng Zhang, 2016

8._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 11 > F
 Dapeng Zhang, 2016

9._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 1 > FP
 Dapeng Zhang, 2016

10._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 10
 Dapeng Zhang, 2016

11._UF_667

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 3
 Dapeng Zhang, 2016

12._UF_667

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 2
 Dapeng Zhang, 2016

13._UF_667

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1206 7
 Dapeng Zhang, 2016

14._UF_667

98.7 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

15._UF_667 RUQ_55

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._UF_667

98.7 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0244
 Dapeng Zhang, 2016

17._UF_667

98.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F466 T2
 Dapeng Zhang, 2016

18._UF_667 RUQ_55

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._UF_667 RUQ_55

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

20._UF_667

62.8 %
39 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

21._UF_667 GC-01-29-2-6

55.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

22._UF_667 RUQ_55

55.6 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

23._UF_667 UF_667_Fld#_119_Plt#_1

39.4 %
80 shared markers

USDA-TARS, United States of America
Location: Field: 119, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240