SNP Profiles of UF 677   View Data

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 Key

 1234567891011121314
_Input profile
AACTACAGAGCTCCCTCTGGCTCCCTAT
1._GC-01-027-2-04
AACTACAGAGCTCCCTCTGGCTCCCTAT
2._GC-01-027-2-04
AACTACAGAGCTCCCTCTGGCTCCCTAT
3._GC-01-027-2-04
AACTACAGAGCTCCCTCTGGCTCCCTAT
4._GC-01-027-2-04
AACTACAGAGCTCCCTCTGGCTCCCTAT
5._GC-01-027-2-04
AACTACAGAGCTCCCTCTGGCTCCCTAT
6._UF_677
AACTAC________CTCTGG__CC____
7._UF_677
AACTAC________CTCTGG__CC____
8._UF_677
AACTAC________CTCTGG__CC____
9._UF_677
AACTAC________CTCTGG__CC____
10._UF_677
AACTAC________CTCTGG__CC____
11._UF_677
AACTAC________CTCTGG__CC____
12._UF_677
AACTAC________CTCTGG__CC____
13._UF_677
AACTAC__________CTGG__CC____
 1516171819202122232425262728
_Input profile
CCAAAAGGCGGGCTAGTTAGATATCGCG
1._GC-01-027-2-04
CCAAAAGGCGGGCTAGTTAGATATCGCG
2._GC-01-027-2-04
CCAAAAGGCGGGCTAGTTAGATATCGCG
3._GC-01-027-2-04
CCAAAAGGCGGGCTAGTTAGATATCGCG
4._GC-01-027-2-04
CCAAAAGGCGGGCTAGTTAGATATCGCG
5._GC-01-027-2-04
CCAAAAGGCGGGCTAGTTAGATATCGCG
6._UF_677
____AA____GG________ATAT__CG
7._UF_677
____AA____GG________ATAT__CG
8._UF_677
____AA____GG________ATAT__CG
9._UF_677
____AA____GG________ATAT__CG
10._UF_677
____AA____GG________ATAT__CG
11._UF_677
____AA____GG________ATAT__CG
12._UF_677
____AA____GG________ATAT__CG
13._UF_677
____AA____GG________ATAT__CG
 2930313233343536373839404142
_Input profile
AACTGTAGCCACAGGTGGGTAGCCAACC
1._GC-01-027-2-04
AACTGTAGCCACAGGTGGGTAGCCAACC
2._GC-01-027-2-04
AACTGTAGCCACAGGTGGGTAGCCAACC
3._GC-01-027-2-04
AACTGTAGCCACAGGTGGGTAGCCAACC
4._GC-01-027-2-04
AACTGTAGCCACAGGTGGGTAGCCAACC
5._GC-01-027-2-04
AACTGTAGCCACAGGTGGGTAGCCAACC
6._UF_677
AA______CC__AGGT____AG______
7._UF_677
AA______CC__AGGT____AG______
8._UF_677
AA______CC__AGGT____AG______
9._UF_677
AA______CC__AGGT____AG______
10._UF_677
AA______CC__AGGT____AG______
11._UF_677
AA______CC__AGGT____AG______
12._UF_677
AA______CC__AGGT____AG______
13._UF_677
________CC____GT____AG______
 4344454647484950515253545556
_Input profile
GTATCCAGAGAGCTCCGGGGGTTTCTCT
1._GC-01-027-2-04
GTATCCAGAGAGCTCCGGGGGTTTCTCT
2._GC-01-027-2-04
GTATCCAGAGAGCTCCGGGGGTTTCTCT
3._GC-01-027-2-04
GTATCCAGAGAGCTCCGGGGGTTTCTCT
4._GC-01-027-2-04
GTATCCAGAGAGCTCCGGGGGTTTCTCT
5._GC-01-027-2-04
GTATCCAGAGAGCTCCGGGGGTTTCTCT
6._UF_677
____CC__________________CTCT
7._UF_677
____CC__________________CTCT
8._UF_677
____CC__________________CTCT
9._UF_677
____CC__________________CTCT
10._UF_677
____CC__________________CTCT
11._UF_677
____CC__________________CTCT
12._UF_677
____CC__________________CTCT
13._UF_677
____CC__________________CT__
 5758596061626364656667686970
_Input profile
GTAGCGCTCTACGGAGACAGGTGTAGCT
1._GC-01-027-2-04
GTAGCGCTCTACGGAGACAGGTGTAGCT
2._GC-01-027-2-04
GTAGCGCTCTACGGAGACAGGTGTAGCT
3._GC-01-027-2-04
GTAGCGCTCTACGGAGACAGGTGTAGCT
4._GC-01-027-2-04
GTAGCGCTCTACGGAGACAGGTGTAGCT
5._GC-01-027-2-04
GTAGCGCTCTACGGAGACAGGTGTAGCT
6._UF_677
____CG__CTACGG__ACAGGTGT____
7._UF_677
____CG__CTACGG__ACAGGTGT____
8._UF_677
____CG__CTACGG__ACAGGTGT____
9._UF_677
____CG__CTACGG__ACAGGTGT____
10._UF_677
____CG__CTACGG__ACAGGTGT____
11._UF_677
____CG__CTACGG__ACAGGTGT____
12._UF_677
____CG__CTACGG__ACAGGTGT____
13._UF_677
________CTACGG__ACAG__GT____
 7172737475767778798081828384
_Input profile
CCGGTTACAGACAAAGCCCGCTATACCT
1._GC-01-027-2-04
CCGGTTACAGACAAAGCCCGCTATACCT
2._GC-01-027-2-04
CCGGTTACAGACAAAGCCCGCTATACCT
3._GC-01-027-2-04
CCGGTTACAGACAAAGCCCGCTATACCT
4._GC-01-027-2-04
CCGGTTACAGACAAAGCCCGCTATACCT
5._GC-01-027-2-04
CCGGTTACAGACAAAGCCCGCTATACCT
6._UF_677
__GGTT__________CCCG______CT
7._UF_677
__GGTT__________CCCG______CT
8._UF_677
__GGTT__________CCCG______CT
9._UF_677
__GGTT__________CCCG______CT
10._UF_677
__GGTT__________CCCG______CT
11._UF_677
__GGTT__________CCCG______CT
12._UF_677
__AGTT__________CCCG______CT
13._UF_677
__AGTT__________CCCG______CT
 85868788899091929394    
_Input profile
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
1._GC-01-027-2-04
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
2._GC-01-027-2-04
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
3._GC-01-027-2-04
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
4._GC-01-027-2-04
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
5._GC-01-027-2-04
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
6._UF_677
CTCT__AG__CTGTTT____X_XX_XX_XX_X
7._UF_677
CTCT__AG__CTGTTT____X_XX_XX_XX_X
8._UF_677
CTCT__AG__CTGTTT____X_XX_XX_XX_X
9._UF_677
CTCT__AG__CTGTTT____X_XX_XX_XX_X
10._UF_677
CTCT__AG__CTGTTT____X_XX_XX_XX_X
11._UF_677
CTCT__AG__CTGTTT____X_XX_XX_XX_X
12._UF_677
CTCT__AG__CTGTTT____X_XX_XX_XX_X
13._UF_677
CT________CTGTTT____X_XX_XX_XX_X

Input profile: UF_677 GC-01-027-2-04

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP2
 Mars, 2018

1._UF_677 GC-01-027-2-04

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._UF_677 GC-01-027-2-04

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._UF_677 GC-01-027-2-04

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

4._UF_677 GC-01-027-2-04

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._UF_677 GC-01-027-2-04

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._UF_677

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._UF_677

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 5
 Dapeng Zhang, 2016

8._UF_677

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 10
 Dapeng Zhang, 2016

9._UF_677

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 11
 Dapeng Zhang, 2016

10._UF_677

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 13 > F
 Dapeng Zhang, 2016

11._UF_677

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 6 > FP
 Dapeng Zhang, 2016

12._UF_677

98.7 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Row 43 7_9
 Dapeng Zhang, 2016

13._UF_677

98.4 %
31 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240