SNP Profiles of UF 677   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTACAGAGCTCCCTCTGGCTCCCT
1._GC-01-027-2-04
AAAACTACAGAGCTCCCTCTGGCTCCCT
2._GC-01-027-2-04
AAAACTACAGAGCTCCCTCTGGCTCCCT
3._GC-01-027-2-04
AAAACTACAGAGCTCCCTCTGGCTCCCT
4._GC-01-027-2-04
AAAACTACAGAGCTCCCTCTGGCTCCCT
5._GC-01-027-2-04
AA__CTACAGAGCTCCCTCTGGCTCCCT
6._UF_677
AAAACTAC________CTCTGG__CC__
7._UF_677
AAAACTAC________CTCTGG__CC__
8._UF_677
AAAACTAC________CTCTGG__CC__
9._UF_677
AAAACTAC________CTCTGG__CC__
10._UF_677
AAAACTAC________CTCTGG__CC__
11._UF_677
AA__CTAC________CTCTGG__CC__
12._UF_677
AAAACTAC________CTCTGG__CC__
13._UF_677
AAAACTAC__________CTGG__CC__
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._GC-01-027-2-04
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._GC-01-027-2-04
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._GC-01-027-2-04
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._GC-01-027-2-04
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._GC-01-027-2-04
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._UF_677
______AA____GG________ATAT__
7._UF_677
______AA____GG________ATAT__
8._UF_677
______AA____GG________ATAT__
9._UF_677
______AA____GG________ATAT__
10._UF_677
______AA____GG________ATAT__
11._UF_677
______AA____GG________ATAT__
12._UF_677
______AA____GG________ATAT__
13._UF_677
______AA____GG________ATAT__
 2930313233343536373839404142
_Input profile
CGAACTGTAGCCACAGGTGGGTAGCCAA
1._GC-01-027-2-04
CGAACTGTAGCCACAGGTGGGTAGCCAA
2._GC-01-027-2-04
CGAACTGTAGCCACAGGTGGGTAGCCAA
3._GC-01-027-2-04
CGAACTGTAGCCACAGGTGGGTAGCCAA
4._GC-01-027-2-04
CGAACTGTAGCCACAGGTGGGTAGCCAA
5._GC-01-027-2-04
CGAACTGTAGCCACAGGTGGGTAGCCAA
6._UF_677
CGAA______CC__AGGT____AG____
7._UF_677
CGAA______CC__AGGT____AG____
8._UF_677
CGAA______CC__AGGT____AG____
9._UF_677
CGAA______CC__AGGT____AG____
10._UF_677
CGAA______CC__AGGT____AG____
11._UF_677
CGAA______CC__AGGT____AG____
12._UF_677
CGAA______CC__AGGT____AG____
13._UF_677
CG________CC____GT____AG____
 4344454647484950515253545556
_Input profile
CCGTATCCAGAGAGCTCCGGGGGTTTCT
1._GC-01-027-2-04
CCGTATCCAGAGAGCTCCGGGGGTTTCT
2._GC-01-027-2-04
CCGTATCCAGAGAGCTCCGGGGGTTTCT
3._GC-01-027-2-04
CCGTATCCAGAGAGCTCCGGGGGTTTCT
4._GC-01-027-2-04
CCGTATCCAGAGAGCTCCGGGGGTTTCT
5._GC-01-027-2-04
CCGTATCCAGAGAGCTCCGGGGGTTTCT
6._UF_677
______CC__________________CT
7._UF_677
______CC__________________CT
8._UF_677
______CC__________________CT
9._UF_677
______CC__________________CT
10._UF_677
______CC__________________CT
11._UF_677
______CC__________________CT
12._UF_677
______CC__________________CT
13._UF_677
______CC__________________CT
 5758596061626364656667686970
_Input profile
CTGTAGCGCTCTACGGAGACAGGTGTAG
1._GC-01-027-2-04
CTGTAGCGCTCTACGGAGACAGGTGTAG
2._GC-01-027-2-04
CTGTAGCGCTCTACGGAGACAGGTGTAG
3._GC-01-027-2-04
CTGTAGCGCTCTACGGAGACAGGTGTAG
4._GC-01-027-2-04
CTGTAGCGCTCTACGGAGACAGGTGTAG
5._GC-01-027-2-04
CTGTAGCGCTCTACGGAGACAGGTGTAG
6._UF_677
CT____CG__CTACGG__ACAGGTGT__
7._UF_677
CT____CG__CTACGG__ACAGGTGT__
8._UF_677
CT____CG__CTACGG__ACAGGTGT__
9._UF_677
CT____CG__CTACGG__ACAGGTGT__
10._UF_677
CT____CG__CTACGG__ACAGGTGT__
11._UF_677
CT____CG__CTACGG__ACAGGTGT__
12._UF_677
CT____CG__CTACGG__ACAGGTGT__
13._UF_677
__________CTACGG__ACAG__GT__
 7172737475767778798081828384
_Input profile
CTCCGGTTACAGACAAAGCCCGCTATAC
1._GC-01-027-2-04
CTCCGGTTACAGACAAAGCCCGCTATAC
2._GC-01-027-2-04
CTCCGGTTACAGACAAAGCCCGCTATAC
3._GC-01-027-2-04
CTCCGGTTACAGACAAAGCCCGCTATAC
4._GC-01-027-2-04
CTCCGGTTACAGACAAAGCCCGCTATAC
5._GC-01-027-2-04
CTCCGGTTACAGACAAAGCCCGCTATAC
6._UF_677
____GGTT__________CCCG______
7._UF_677
____GGTT__________CCCG______
8._UF_677
____GGTT__________CCCG______
9._UF_677
____GGTT__________CCCG______
10._UF_677
____GGTT__________CCCG______
11._UF_677
____GGTT__________CCCG______
12._UF_677
____AGTT__________CCCG______
13._UF_677
____AGTT__________CCCG______
 8586878889909192939495   
_Input profile
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
1._GC-01-027-2-04
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
2._GC-01-027-2-04
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
3._GC-01-027-2-04
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
4._GC-01-027-2-04
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
5._GC-01-027-2-04
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
6._UF_677
CTCTCT__AG__CTGTTT____X_XX_XX_X
7._UF_677
CTCTCT__AG__CTGTTT____X_XX_XX_X
8._UF_677
CTCTCT__AG__CTGTTT____X_XX_XX_X
9._UF_677
CTCTCT__AG__CTGTTT____X_XX_XX_X
10._UF_677
CTCTCT__AG__CTGTTT____X_XX_XX_X
11._UF_677
CTCTCT__AG__CTGTTT____X_XX_XX_X
12._UF_677
CTCTCT__AG__CTGTTT____X_XX_XX_X
13._UF_677
CTCT________CTGTTT____X_XX_XX_X

Input profile: UF_677 GC-01-027-2-04

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._UF_677 GC-01-027-2-04

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._UF_677 GC-01-027-2-04

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

3._UF_677 GC-01-027-2-04

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._UF_677 GC-01-027-2-04

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._UF_677 GC-01-027-2-04

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP2
 Mars, 2018

6._UF_677

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._UF_677

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 5
 Dapeng Zhang, 2016

8._UF_677

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 10
 Dapeng Zhang, 2016

9._UF_677

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 11
 Dapeng Zhang, 2016

10._UF_677

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 6 > FP
 Dapeng Zhang, 2016

11._UF_677

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 13 > F
 Dapeng Zhang, 2016

12._UF_677

98.8 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Row 43 7_9
 Dapeng Zhang, 2016

13._UF_677

98.4 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240