SNP Profiles of UF-29   View Data

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 Key

 1234567891011121314
_Input profile
ATAACTACAGAGCTCTCCCCTTCTTTAT
1._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
2._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
3._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
4._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
5._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
6._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
7._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
8._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
9._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
10._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
11._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
12._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCTTCTTTAT
13._UF_29
ATAACTAC________CCCC__CT____
14._UF_29
ATAACTAC________CCCC__CT____
15._UF_29
ATAACTAC________CCCC__CT____
16._UF_29
ATAACTAC________CCCC__CT____
17._UF_29
ATAACTAC________CCCC__CT____
18._UF_29
ATAACTAC________CCCC__CT____
19._UF_29
ATAACTAC________CCCC__CT____
20._UF_29
ATAACTAC________CCCC__CT____
21._UF_29
ATAACTAC________CCCC__CT____
22._UF_29
ATAACTAC________CCCC__CT____
23._UF_29
ATAACTAC________CCCC__CT____
24._UF_29
ATAACTAC________CCCC__CT____
25._UF_29
ATAACTAC________CCCC__CT____
26._UF_29
ATACCTAC________CCCC__CT____
27._UF_29
ATACCTAC________CCCC__CT____
28._UF_29
ATACCTAC__________CC__CT____
29._UF_29_Fld#_20_Plt#_5
AT____ACAGAG__AGGG__AAAGAAAT
 1516171819202122232425262728
_Input profile
ACAAAGCGCGGGCTAACTGGATATCCGG
1._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
2._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
3._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
4._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
5._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
6._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
7._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
8._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
9._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
10._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
11._GC-01-020-1-20
ACAAAGCGCGGG__AACTGGATATCCGG
12._GC-01-020-1-20
ACAAAGCGCGGGCTAACTGGATATCCGG
13._UF_29
____AG____GG________ATAT__GG
14._UF_29
____AG____GG________ATAT__GG
15._UF_29
____AG____GG________ATAT__GG
16._UF_29
____AG____GG________ATAT__GG
17._UF_29
____AG____GG________ATAT__GG
18._UF_29
____AG____GG________ATAT__GG
19._UF_29
____AG____GG________ATAT__GG
20._UF_29
____AG____GG________ATAT__GG
21._UF_29
____AG____GG________ATAT__GG
22._UF_29
____AG____GG________ATAT__GG
23._UF_29
____AG____GG________ATAT__GG
24._UF_29
____AG____GG________ATAT__GG
25._UF_29
____AG____GG________ATAT__GG
26._UF_29
____AG____GG________ATAT__GG
27._UF_29
____AG____GG________ATAT__GG
28._UF_29
____AG____GG________ATAT__GG
29._UF_29_Fld#_20_Plt#_5
ACAGAGCG__GGAGAGAGGGATATGGCC
 2930313233343536373839404142
_Input profile
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
1._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
2._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
3._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
4._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
5._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
6._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
7._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
8._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
9._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
10._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
11._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
12._GC-01-020-1-20
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
13._UF_29
AT______CG__AGGT____AG______
14._UF_29
AT______CG__AGGT____AG______
15._UF_29
AT______CG__AGGT____AG______
16._UF_29
AT______CG__AGGT____AG______
17._UF_29
AT______CG__AGGT____AG______
18._UF_29
AT______CG__AGGT____AG______
19._UF_29
AT______CG__AGGT____AG______
20._UF_29
AT______CG__AGGT____AG______
21._UF_29
AT______CG__AGGT____AG______
22._UF_29
AT______CG__AGGT____AG______
23._UF_29
AT______CG__AGGT____AG______
24._UF_29
AT______CG__AGGT____AG______
25._UF_29
AT______CG__AGGT____AG______
26._UF_29
AT______CG__AGGT____AG______
27._UF_29
AT______CG__AGGT____AG______
28._UF_29
________CG____GT____AG______
29._UF_29_Fld#_20_Plt#_5
ATAAACAGCGCCAGACCCAAAGGGAGCG
 4344454647484950515253545556
_Input profile
GGTTCTAAGGAACCACGGAGTTTTCTCT
1._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
2._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
3._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
4._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
5._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
6._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
7._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
8._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
9._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
10._GC-01-020-1-20
GGTTCTAAGGAACC__GGAGTTTTCTCT
11._GC-01-020-1-20
GGTTCTAAGGAACCACGGAGTTTTCTCT
12._GC-01-020-1-20
GGTT__AAGGAACCACGGAGTTTTCTCT
13._UF_29
____CT__________________CTCT
14._UF_29
____CT__________________CTCT
15._UF_29
____CT__________________CTCT
16._UF_29
____CT__________________CTCT
17._UF_29
____CT__________________CTCT
18._UF_29
____CT__________________CTCT
19._UF_29
____CT__________________CTCT
20._UF_29
____CT__________________CTCT
21._UF_29
____CT__________________CTCT
22._UF_29
____CT__________________CTCT
23._UF_29
____CT__________________CTCT
24._UF_29
____CT__________________CTCT
25._UF_29
________________________CTCT
26._UF_29
____CT__________________CTCT
27._UF_29
____CT__________________CTCT
28._UF_29
____CT__________________CT__
29._UF_29_Fld#_20_Plt#_5
CC__AG__GGAAGG__GGAGAAAAAGAG
 5758596061626364656667686970
_Input profile
TTAGCCCTCTACCGAGCCAAGTGGAGTT
1._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
2._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
3._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
4._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
5._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
6._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
7._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
8._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
9._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
10._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
11._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
12._GC-01-020-1-20
TTAGCCCTCTACCGAGCCAAGTGGAGTT
13._UF_29
____CC__CTACCG__CCAAGTGG____
14._UF_29
____CC__CTACCG__CCAAGTGG____
15._UF_29
____CC__CTACCG__CCAAGTGG____
16._UF_29
____CC__CTACCG__CCAAGTGG____
17._UF_29
____CC__CTACCG__CCAAGTGG____
18._UF_29
____CC__CTACCG__CCAAGTGG____
19._UF_29
____CC__CTACCG__CCAAGTGG____
20._UF_29
____CC__CTACCG__CCAAGTGG____
21._UF_29
____CC__CTACCG__CCAAGTGG____
22._UF_29
____CC__CTACCG__CCAAGTGG____
23._UF_29
____CC__CTACCG__CCAAGTGG____
24._UF_29
____CC__CTACCG__CCAAGTGG____
25._UF_29
____CC__CTACCG__CCAAGTGG____
26._UF_29
____CC__CTACCG__CCAAGTGG____
27._UF_29
________CTACCG__CCAAGTGG____
28._UF_29
________CTACCG__CCAA__GG____
29._UF_29_Fld#_20_Plt#_5
AAAGGGAGAGACCGAGCCAAACCCAG__
 7172737475767778798081828384
_Input profile
CCAGCTACAGACACAAACCGCCATACCT
1._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
2._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
3._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
4._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
5._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
6._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
7._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
8._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
9._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
10._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
11._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
12._GC-01-020-1-20
CCAGCTACAGACACAAACCGCCATACCT
13._UF_29
__AGCT__________ACCG______CT
14._UF_29
__AGCT__________ACCG______CT
15._UF_29
__AGCT__________ACCG______CT
16._UF_29
__AGCT__________ACCG______CT
17._UF_29
__AGCT__________ACCG______CT
18._UF_29
__AGCT__________ACCG______CT
19._UF_29
__AGCT__________ACCG______CT
20._UF_29
__AGCT__________ACCG______CT
21._UF_29
__AGCT__________ACCG______CT
22._UF_29
__AGCT__________ACCG______CT
23._UF_29
__AGCT__________ACCG______CT
24._UF_29
__AGCT__________ACCG______CT
25._UF_29
__AGCT__________ACCG______CT
26._UF_29
__AACT__________ACCG______CT
27._UF_29
__AACT__________ACCG______CT
28._UF_29
__AACT__________ACCG______CT
29._UF_29_Fld#_20_Plt#_5
____AGACAGACAC__ACCGGGATACAG
 85868788899091929394    
_Input profile
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
1._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
2._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
3._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
4._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
5._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
6._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
7._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
8._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
9._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
10._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
11._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
12._GC-01-020-1-20
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
13._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
14._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
15._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
16._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
17._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
18._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
19._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
20._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
21._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
22._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
23._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
24._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
25._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
26._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
27._UF_29
TTCT__AG__CCGTCT____X_XX_XX_XX_X
28._UF_29
TT________CCGTCT____X_XX_XX_XX_X
29._UF_29_Fld#_20_Plt#_5
AA__AA____GGACAGATGGX_XX_XX_XX_X

Input profile: UF_29 GC-01-020-1-20

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

1._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

3._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

6._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

8._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

9._UF_29 GC-01-020-1-20

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._UF_29 GC-01-020-1-20

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

11._UF_29 GC-01-020-1-20

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._UF_29 GC-01-020-1-20

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

14._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

15._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

16._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

17._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

18._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

19._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

20._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

21._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

22._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

23._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

24._UF_29

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

25._UF_29

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

26._UF_29

97.4 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._UF_29

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

28._UF_29

96.8 %
31 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

29._UF_29 UF_29_Fld#_20_Plt#_5

53.2 %
79 shared markers

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USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240