SNP Profiles of UF-29   View Data

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 Key

 1234567891011121314
_Input profile
ATAACTACAGAGCTCTCCCCAGTTCTTT
1._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
2._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
3._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
4._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
5._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
6._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
7._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
8._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
9._GC-01-020-1-20
ATAACTACAGAGCTCTCCCC_TTCTTT
10._GC-01-020-1-20
ATAACTACAGAGCTCTCCCC_TTCTTT
11._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
12._GC-01-020-1-20
ATAACTACAGAGCTCTCCCCAGTTCTTT
13._UF_29
ATAACTAC____CCCCAG_CT_
14._UF_29
ATAACTAC____CCCCAG_CT_
15._UF_29
ATAACTAC____CCCCAG_CT_
16._UF_29
ATAACTAC____CCCCAG_CT_
17._UF_29
ATAACTAC____CCCCAG_CT_
18._UF_29
ATAACTAC____CCCCAG_CT_
19._UF_29
ATAACTAC____CCCCAG_CT_
20._UF_29
ATAACTAC____CCCCAG_CT_
21._UF_29
ATAACTAC____CCCCAG_CT_
22._UF_29
ATAACTAC____CCCCAG_CT_
23._UF_29
ATAACTAC____CCCC__CT_
24._UF_29
ATAACTAC____CCCC__CT_
25._UF_29
ATAACTAC____CCCCAG_CT_
26._UF_29
ATACCTAC____CCCCAG_CT_
27._UF_29
ATACCTAC_____CCAG_CT_
28._UF_29
ATACCTAC____CCCCAA_CT_
29._UF_29_Fld#_20_Plt#_5
AT__ACAGAG_AGGG_AGAAAGAA
 1516171819202122232425262728
_Input profile
ATACAAAGCGCGGGCTAACTGGATATCC
1._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
2._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
3._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
4._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
5._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
6._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
7._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
8._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
9._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
10._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
11._GC-01-020-1-20
ATACAAAGCGCGGG_AACTGGATATCC
12._GC-01-020-1-20
ATACAAAGCGCGGGCTAACTGGATATCC
13._UF_29
___AG__GG____ATAT_
14._UF_29
___AG__GG____ATAT_
15._UF_29
___AG__GG____ATAT_
16._UF_29
___AG__GG____ATAT_
17._UF_29
___AG__GG____ATAT_
18._UF_29
___AG__GG____ATAT_
19._UF_29
___AG__GG____ATAT_
20._UF_29
___AG__GG____ATAT_
21._UF_29
___AG__GG____ATAT_
22._UF_29
___AG__GG____ATAT_
23._UF_29
___AG__GG____ATAT_
24._UF_29
___AG__GG____ATAT_
25._UF_29
___AG__GG____ATAT_
26._UF_29
___AG__GG____ATAT_
27._UF_29
___AG__GG____ATAT_
28._UF_29
___AG__GG____ATAT_
29._UF_29_Fld#_20_Plt#_5
ATACAGAGCG_GGAGAGAGGGATATGG
 2930313233343536373839404142
_Input profile
GGATTTGTAGCGCCAGGTGGTTAGCCAG
1._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
2._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
3._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
4._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
5._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
6._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
7._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
8._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
9._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
10._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
11._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
12._GC-01-020-1-20
GGATTTGTAGCGCCAGGTGGTTAGCCAG
13._UF_29
GGAT___CG_AGGT__AG__
14._UF_29
GGAT___CG_AGGT__AG__
15._UF_29
GGAT___CG_AGGT__AG__
16._UF_29
GGAT___CG_AGGT__AG__
17._UF_29
GGAT___CG_AGGT__AG__
18._UF_29
GGAT___CG_AGGT__AG__
19._UF_29
GGAT___CG_AGGT__AG__
20._UF_29
GGAT___CG_AGGT__AG__
21._UF_29
GGAT___CG_AGGT__AG__
22._UF_29
GGAT___CG_AGGT__AG__
23._UF_29
GGAT___CG_AGGT__AG__
24._UF_29
GGAT___CG_AGGT__AG__
25._UF_29
GGAT___CG_AGGT__AG__
26._UF_29
GGAT___CG_AGGT__AG__
27._UF_29
GG____CG__GT__AG__
28._UF_29
GGAT___CG_AGGT__AG__
29._UF_29_Fld#_20_Plt#_5
CCATAAACAGCGCCAGACCCAAAGGGAG
 4344454647484950515253545556
_Input profile
CGGGTTCTAAGGAACCACGGAGTTTTCT
1._GC-01-020-1-20
CGGGTTCTAAGGAACCACGGAGTTTTCT
2._GC-01-020-1-20
CGGGTTCTAAGGAACCACGGAGTTTTCT
3._GC-01-020-1-20
CGGGTTCTAAGGAACCACGGAGTTTTCT
4._GC-01-020-1-20
CGGGTTCTAAGGAACCACGGAGTTTTCT
5._GC-01-020-1-20
CGGGTTCTAAGGAACCACGGAGTTTTCT
6._GC-01-020-1-20
CGGGTTCTAAGGAACCACGGAGTTTTCT
7._GC-01-020-1-20
CGGGTTCTAAGGAACCACGGAGTTTTCT
8._GC-01-020-1-20
CGGGTTCTAAGGAACC_GGAGTTTTCT
9._GC-01-020-1-20
CGGGTTCTAAGGAACCACGGAGTTTTCT
10._GC-01-020-1-20
CGGGTTCTAAGGAACCACGGAGTTTTCT
11._GC-01-020-1-20
CGGGTTCTAAGGAACCACGGAGTTTTCT
12._GC-01-020-1-20
CGGGTT_AAGGAACCACGGAGTTTTCT
13._UF_29
___CT_________CT
14._UF_29
___CT_________CT
15._UF_29
___CT_________CT
16._UF_29
___CT_________CT
17._UF_29
___CT_________CT
18._UF_29
___CT_________CT
19._UF_29
___CT_________CT
20._UF_29
___CT_________CT
21._UF_29
___CT_________CT
22._UF_29
___CT_________CT
23._UF_29
___CT_________CT
24._UF_29
___CT_________CT
25._UF_29
_____________CT
26._UF_29
___CT_________CT
27._UF_29
___CT_________CT
28._UF_29
___CT_________CT
29._UF_29_Fld#_20_Plt#_5
CGCC_AG_GGAAGG_GGAGAAAAAG
 5758596061626364656667686970
_Input profile
CTTTAGCCCTCTACCGAGCCAAGTGGAG
1._GC-01-020-1-20
CTTTAGCCCTCTACCGAGCCAAGTGGAG
2._GC-01-020-1-20
CTTTAGCCCTCTACCGAGCCAAGTGGAG
3._GC-01-020-1-20
CTTTAGCCCTCTACCGAGCCAAGTGGAG
4._GC-01-020-1-20
CTTTAGCCCTCTACCGAGCCAAGTGGAG
5._GC-01-020-1-20
CTTTAGCCCTCTACCGAGCCAAGTGGAG
6._GC-01-020-1-20
CTTTAGCCCTCTACCGAGCCAAGTGGAG
7._GC-01-020-1-20
CTTTAGCCCTCTACCGAGCCAAGTGGAG
8._GC-01-020-1-20
CTTTAGCCCTCTACCGAGCCAAGTGGAG
9._GC-01-020-1-20
CTTTAGCCCTCTACCGAGCCAAGTGGAG
10._GC-01-020-1-20
CTTTAGCCCTCTACCGAGCCAAGTGGAG
11._GC-01-020-1-20
CTTTAGCCCTCTACCGAGCCAAGTGGAG
12._GC-01-020-1-20
CTTTAGCCCTCTACCGAGCCAAGTGGAG
13._UF_29
CT__CC_CTACCG_CCAAGTGG_
14._UF_29
CT__CC_CTACCG_CCAAGTGG_
15._UF_29
CT__CC_CTACCG_CCAAGTGG_
16._UF_29
CT__CC_CTACCG_CCAAGTGG_
17._UF_29
CT__CC_CTACCG_CCAAGTGG_
18._UF_29
CT__CC_CTACCG_CCAAGTGG_
19._UF_29
CT__CC_CTACCG_CCAAGTGG_
20._UF_29
CT__CC_CTACCG_CCAAGTGG_
21._UF_29
CT__CC_CTACCG_CCAAGTGG_
22._UF_29
CT__CC_CTACCG_CCAAGTGG_
23._UF_29
CT__CC_CTACCG_CCAAGTGG_
24._UF_29
CT__CC_CTACCG_CCAAGTGG_
25._UF_29
CT__CC_CTACCG_CCAAGTGG_
26._UF_29
CT__CC_CTACCG_CCAAGTGG_
27._UF_29
_____CTACCG_CCAA_GG_
28._UF_29
CT____CTACCG_CCAAGTGG_
29._UF_29_Fld#_20_Plt#_5
AGAAAGGGAGAGACCGAGCCAAACCCAG
 7172737475767778798081828384
_Input profile
TTCCAGCTACAGACACAAACCGCCATAC
1._GC-01-020-1-20
TTCCAGCTACAGACACAAACCGCCATAC
2._GC-01-020-1-20
TTCCAGCTACAGACACAAACCGCCATAC
3._GC-01-020-1-20
TTCCAGCTACAGACACAAACCGCCATAC
4._GC-01-020-1-20
TTCCAGCTACAGACACAAACCGCCATAC
5._GC-01-020-1-20
TTCCAGCTACAGACACAAACCGCCATAC
6._GC-01-020-1-20
TTCCAGCTACAGACACAAACCGCCATAC
7._GC-01-020-1-20
TTCCAGCTACAGACACAAACCGCCATAC
8._GC-01-020-1-20
TTCCAGCTACAGACACAAACCGCCATAC
9._GC-01-020-1-20
TTCCAGCTACAGACACAAACCGCCATAC
10._GC-01-020-1-20
TTCCAGCTACAGACACAAACCGCCATAC
11._GC-01-020-1-20
TTCCAGCTACAGACACAAACCGCCATAC
12._GC-01-020-1-20
TTCCAGCTACAGACACAAACCGCCATAC
13._UF_29
__AGCT_____ACCG___
14._UF_29
__AGCT_____ACCG___
15._UF_29
__AGCT_____ACCG___
16._UF_29
__AGCT_____ACCG___
17._UF_29
__AGCT_____ACCG___
18._UF_29
__AGCT_____ACCG___
19._UF_29
__AGCT_____ACCG___
20._UF_29
__AGCT_____ACCG___
21._UF_29
__AGCT_____ACCG___
22._UF_29
__AGCT_____ACCG___
23._UF_29
__AGCT_____ACCG___
24._UF_29
__AGCT_____ACCG___
25._UF_29
__AGCT_____ACCG___
26._UF_29
__AACT_____ACCG___
27._UF_29
__AACT_____ACCG___
28._UF_29
__AACT_____ACCG___
29._UF_29_Fld#_20_Plt#_5
___AGACAGACAC_ACCGGGATAC
 8586878889909192939495   
_Input profile
CTTTCTTTAGCTCCGTCTATGGX_XX_XX_X
1._GC-01-020-1-20
CTTTCTTTAGCTCCGTCTATGGX_XX_XX_X
2._GC-01-020-1-20
CTTTCTTTAGCTCCGTCTATGGX_XX_XX_X
3._GC-01-020-1-20
CTTTCTTTAGCTCCGTCTATGGX_XX_XX_X
4._GC-01-020-1-20
CTTTCTTTAGCTCCGTCTATGGX_XX_XX_X
5._GC-01-020-1-20
CTTTCTTTAGCTCCGTCTATGGX_XX_XX_X
6._GC-01-020-1-20
CTTTCTTTAGCTCCGTCTATGGX_XX_XX_X
7._GC-01-020-1-20
CTTTCTTTAGCTCCGTCTATGGX_XX_XX_X
8._GC-01-020-1-20
CTTTCTTTAGCTCCGTCTATGGX_XX_XX_X
9._GC-01-020-1-20
CTTTCTTTAGCTCCGTCTATGGX_XX_XX_X
10._GC-01-020-1-20
CTTTCTTTAGCTCCGTCTATGGX_XX_XX_X
11._GC-01-020-1-20
CTTTCTTTAGCTCCGTCTATGGX_XX_XX_X
12._GC-01-020-1-20
CTTTCTTTAGCTCCGTCTATGGX_XX_XX_X
13._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
14._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
15._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
16._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
17._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
18._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
19._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
20._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
21._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
22._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
23._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
24._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
25._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
26._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
27._UF_29
CTTT____CCGTCT__X_XX_XX_X
28._UF_29
CTTTCT_AG_CCGTCT__X_XX_XX_X
29._UF_29_Fld#_20_Plt#_5
AGAA_AA__GGACAGATGGX_XX_XX_X

Input profile: UF_29 GC-01-020-1-20

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

1._UF_29 GC-01-020-1-20

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._UF_29 GC-01-020-1-20

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

3._UF_29 GC-01-020-1-20

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._UF_29 GC-01-020-1-20

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._UF_29 GC-01-020-1-20

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

6._UF_29 GC-01-020-1-20

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

7._UF_29 GC-01-020-1-20

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._UF_29 GC-01-020-1-20

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

9._UF_29 GC-01-020-1-20

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

10._UF_29 GC-01-020-1-20

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

11._UF_29 GC-01-020-1-20

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._UF_29 GC-01-020-1-20

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

14._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

15._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

16._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

17._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

18._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

19._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

20._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

21._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

22._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

23._UF_29

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

24._UF_29

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

25._UF_29

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

26._UF_29

97.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._UF_29

96.9 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

28._UF_29

96.2 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

29._UF_29 UF_29_Fld#_20_Plt#_5

53.8 %
80 shared markers

USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240