SNP Profiles of EET 95 [ECU]   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATAACTACAGAGCTCTCCCCAGTTCTTT
1._UF_29___
ATAACTACAGAGCTCTCCCCAGTTCTTT
2._UF_29___
ATAACTACAGAGCTCTCCCCAGTTCTTT
3._UF_29___
ATAACTACAGAGCTCTCCCCAGTTCTTT
4._UF_29___
ATAACTACAGAGCTCTCCCCAGTTCTTT
5._UF_29___
ATAACTACAGAGCTCTCCCCAGTTCTTT
6._UF_29___
ATAACTACAGAGCTCTCCCCAGTTCTTT
7._UF_29___
ATAACTACAGAGCTCTCCCCAGTTCTTT
8._UF_29___
ATAACTACAGAGCTCTCCCCAGTTCTTT
9._UF_29___
ATAACTACAGAGCTCTCCCCAGTTCTTT
10._UF_29___
ATAACTACAGAGCTCTCCCC__TTCTTT
11._UF_29___
ATAACTACAGAGCTCTCCCC__TTCTTT
12._UF_29___
ATAACTACAGAGCTCTCCCCAGTTCTTT
13._UF_29___
ATAACTAC________CCCCAG__CT__
14._UF_29___
ATAACTAC________CCCCAG__CT__
15._UF_29___
ATAACTAC________CCCCAG__CT__
16._UF_29___
ATAACTAC________CCCCAG__CT__
17._UF_29___
ATAACTAC________CCCCAG__CT__
18._UF_29___
ATAACTAC________CCCCAG__CT__
19._UF_29___
ATAACTAC________CCCCAG__CT__
20._UF_29___
ATAACTAC________CCCCAG__CT__
21._UF_29___
ATAACTAC________CCCCAG__CT__
22._UF_29___
ATAACTAC________CCCCAG__CT__
23._UF_29___
ATAACTAC________CCCC____CT__
24._UF_29___
ATAACTAC________CCCC____CT__
25._UF_29___
ATAACTAC________CCCCAG__CT__
26._UF_29___
ATACCTAC________CCCCAG__CT__
27._UF_29___
ATACCTAC__________CCAG__CT__
28._UF_29___
ATACCTAC________CCCCAA__CT__
29._UF_29___
AT____ACAGAG__AGGG__AGAAAGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATACAAAGCGCGGGAACTGGATATCCGG
1._UF_29___
ATACAAAGCGCGGGAACTGGATATCCGG
2._UF_29___
ATACAAAGCGCGGGAACTGGATATCCGG
3._UF_29___
ATACAAAGCGCGGGAACTGGATATCCGG
4._UF_29___
ATACAAAGCGCGGGAACTGGATATCCGG
5._UF_29___
ATACAAAGCGCGGGAACTGGATATCCGG
6._UF_29___
ATACAAAGCGCGGGAACTGGATATCCGG
7._UF_29___
ATACAAAGCGCGGGAACTGGATATCCGG
8._UF_29___
ATACAAAGCGCGGGAACTGGATATCCGG
9._UF_29___
ATACAAAGCGCGGGAACTGGATATCCGG
10._UF_29___
ATACAAAGCGCGGGAACTGGATATCCGG
11._UF_29___
ATACAAAGCGCGGGAACTGGATATCCGG
12._UF_29___
ATACAAAGCGCGGGAACTGGATATCCGG
13._UF_29___
______AG____GG______ATAT__GG
14._UF_29___
______AG____GG______ATAT__GG
15._UF_29___
______AG____GG______ATAT__GG
16._UF_29___
______AG____GG______ATAT__GG
17._UF_29___
______AG____GG______ATAT__GG
18._UF_29___
______AG____GG______ATAT__GG
19._UF_29___
______AG____GG______ATAT__GG
20._UF_29___
______AG____GG______ATAT__GG
21._UF_29___
______AG____GG______ATAT__GG
22._UF_29___
______AG____GG______ATAT__GG
23._UF_29___
______AG____GG______ATAT__GG
24._UF_29___
______AG____GG______ATAT__GG
25._UF_29___
______AG____GG______ATAT__GG
26._UF_29___
______AG____GG______ATAT__GG
27._UF_29___
______AG____GG______ATAT__GG
28._UF_29___
______AG____GG______ATAT__GG
29._UF_29___
ATACAGAGCG__GGAGAGGGATATGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
1._UF_29___
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
2._UF_29___
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
3._UF_29___
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
4._UF_29___
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
5._UF_29___
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
6._UF_29___
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
7._UF_29___
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
8._UF_29___
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
9._UF_29___
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
10._UF_29___
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
11._UF_29___
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
12._UF_29___
ATTTGTAGCGCCAGGTGGTTAGCCAGCG
13._UF_29___
AT______CG__AGGT____AG______
14._UF_29___
AT______CG__AGGT____AG______
15._UF_29___
AT______CG__AGGT____AG______
16._UF_29___
AT______CG__AGGT____AG______
17._UF_29___
AT______CG__AGGT____AG______
18._UF_29___
AT______CG__AGGT____AG______
19._UF_29___
AT______CG__AGGT____AG______
20._UF_29___
AT______CG__AGGT____AG______
21._UF_29___
AT______CG__AGGT____AG______
22._UF_29___
AT______CG__AGGT____AG______
23._UF_29___
AT______CG__AGGT____AG______
24._UF_29___
AT______CG__AGGT____AG______
25._UF_29___
AT______CG__AGGT____AG______
26._UF_29___
AT______CG__AGGT____AG______
27._UF_29___
________CG____GT____AG______
28._UF_29___
AT______CG__AGGT____AG______
29._UF_29___
ATAAACAGCGCCAGACCCAAAGGGAGCG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCTAAGGAACCACGGAGTTTTCTCT
1._UF_29___
GGTTCTAAGGAACCACGGAGTTTTCTCT
2._UF_29___
GGTTCTAAGGAACCACGGAGTTTTCTCT
3._UF_29___
GGTTCTAAGGAACCACGGAGTTTTCTCT
4._UF_29___
GGTTCTAAGGAACCACGGAGTTTTCTCT
5._UF_29___
GGTTCTAAGGAACCACGGAGTTTTCTCT
6._UF_29___
GGTTCTAAGGAACCACGGAGTTTTCTCT
7._UF_29___
GGTTCTAAGGAACCACGGAGTTTTCTCT
8._UF_29___
GGTTCTAAGGAACCACGGAGTTTTCTCT
9._UF_29___
GGTTCTAAGGAACC__GGAGTTTTCTCT
10._UF_29___
GGTTCTAAGGAACCACGGAGTTTTCTCT
11._UF_29___
GGTTCTAAGGAACCACGGAGTTTTCTCT
12._UF_29___
GGTT__AAGGAACCACGGAGTTTTCTCT
13._UF_29___
____CT__________________CTCT
14._UF_29___
____CT__________________CTCT
15._UF_29___
____CT__________________CTCT
16._UF_29___
____CT__________________CTCT
17._UF_29___
____CT__________________CTCT
18._UF_29___
____CT__________________CTCT
19._UF_29___
____CT__________________CTCT
20._UF_29___
____CT__________________CTCT
21._UF_29___
____CT__________________CTCT
22._UF_29___
____CT__________________CTCT
23._UF_29___
____CT__________________CTCT
24._UF_29___
____CT__________________CTCT
25._UF_29___
________________________CTCT
26._UF_29___
____CT__________________CTCT
27._UF_29___
____CT__________________CT__
28._UF_29___
____CT__________________CTCT
29._UF_29___
CC__AG__GGAAGG__GGAGAAAAAGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAGCCCTCTACCGAGCCAAGTGGAGTT
1._UF_29___
TTAGCCCTCTACCGAGCCAAGTGGAGTT
2._UF_29___
TTAGCCCTCTACCGAGCCAAGTGGAGTT
3._UF_29___
TTAGCCCTCTACCGAGCCAAGTGGAGTT
4._UF_29___
TTAGCCCTCTACCGAGCCAAGTGGAGTT
5._UF_29___
TTAGCCCTCTACCGAGCCAAGTGGAGTT
6._UF_29___
TTAGCCCTCTACCGAGCCAAGTGGAGTT
7._UF_29___
TTAGCCCTCTACCGAGCCAAGTGGAGTT
8._UF_29___
TTAGCCCTCTACCGAGCCAAGTGGAGTT
9._UF_29___
TTAGCCCTCTACCGAGCCAAGTGGAGTT
10._UF_29___
TTAGCCCTCTACCGAGCCAAGTGGAGTT
11._UF_29___
TTAGCCCTCTACCGAGCCAAGTGGAGTT
12._UF_29___
TTAGCCCTCTACCGAGCCAAGTGGAGTT
13._UF_29___
____CC__CTACCG__CCAAGTGG____
14._UF_29___
____CC__CTACCG__CCAAGTGG____
15._UF_29___
____CC__CTACCG__CCAAGTGG____
16._UF_29___
____CC__CTACCG__CCAAGTGG____
17._UF_29___
____CC__CTACCG__CCAAGTGG____
18._UF_29___
____CC__CTACCG__CCAAGTGG____
19._UF_29___
____CC__CTACCG__CCAAGTGG____
20._UF_29___
____CC__CTACCG__CCAAGTGG____
21._UF_29___
____CC__CTACCG__CCAAGTGG____
22._UF_29___
____CC__CTACCG__CCAAGTGG____
23._UF_29___
____CC__CTACCG__CCAAGTGG____
24._UF_29___
____CC__CTACCG__CCAAGTGG____
25._UF_29___
____CC__CTACCG__CCAAGTGG____
26._UF_29___
____CC__CTACCG__CCAAGTGG____
27._UF_29___
________CTACCG__CCAA__GG____
28._UF_29___
________CTACCG__CCAAGTGG____
29._UF_29___
AAAGGGAGAGACCGAGCCAAACCCAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAGCTACAGACACAAACCGCCATACCT
1._UF_29___
CCAGCTACAGACACAAACCGCCATACCT
2._UF_29___
CCAGCTACAGACACAAACCGCCATACCT
3._UF_29___
CCAGCTACAGACACAAACCGCCATACCT
4._UF_29___
CCAGCTACAGACACAAACCGCCATACCT
5._UF_29___
CCAGCTACAGACACAAACCGCCATACCT
6._UF_29___
CCAGCTACAGACACAAACCGCCATACCT
7._UF_29___
CCAGCTACAGACACAAACCGCCATACCT
8._UF_29___
CCAGCTACAGACACAAACCGCCATACCT
9._UF_29___
CCAGCTACAGACACAAACCGCCATACCT
10._UF_29___
CCAGCTACAGACACAAACCGCCATACCT
11._UF_29___
CCAGCTACAGACACAAACCGCCATACCT
12._UF_29___
CCAGCTACAGACACAAACCGCCATACCT
13._UF_29___
__AGCT__________ACCG______CT
14._UF_29___
__AGCT__________ACCG______CT
15._UF_29___
__AGCT__________ACCG______CT
16._UF_29___
__AGCT__________ACCG______CT
17._UF_29___
__AGCT__________ACCG______CT
18._UF_29___
__AGCT__________ACCG______CT
19._UF_29___
__AGCT__________ACCG______CT
20._UF_29___
__AGCT__________ACCG______CT
21._UF_29___
__AGCT__________ACCG______CT
22._UF_29___
__AGCT__________ACCG______CT
23._UF_29___
__AGCT__________ACCG______CT
24._UF_29___
__AGCT__________ACCG______CT
25._UF_29___
__AGCT__________ACCG______CT
26._UF_29___
__AACT__________ACCG______CT
27._UF_29___
__AACT__________ACCG______CT
28._UF_29___
__AACT__________ACCG______CT
29._UF_29___
____AGACAGACAC__ACCGGGATACAG
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
1._UF_29___
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
2._UF_29___
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
3._UF_29___
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
4._UF_29___
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
5._UF_29___
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
6._UF_29___
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
7._UF_29___
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
8._UF_29___
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
9._UF_29___
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
10._UF_29___
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
11._UF_29___
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
12._UF_29___
TTCTTTAGCTCCGTCTATGGX_XX_XX_XX_X
13._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
14._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
15._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
16._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
17._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
18._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
19._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
20._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
21._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
22._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
23._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
24._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
25._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
26._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
27._UF_29___
TT________CCGTCT____X_XX_XX_XX_X
28._UF_29___
TTCT__AG__CCGTCT____X_XX_XX_XX_X
29._UF_29___
AA__AA____GGACAGATGGX_XX_XX_XX_X

Input profile: UF_29 GC-01-020-1-20

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._UF_29 GC-01-020-1-20

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._UF_29 GC-01-020-1-20

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

3._UF_29 GC-01-020-1-20

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._UF_29 GC-01-020-1-20

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._UF_29 GC-01-020-1-20

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._UF_29 GC-01-020-1-20

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

7._UF_29 GC-01-020-1-20

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

8._UF_29 GC-01-020-1-20

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._UF_29 GC-01-020-1-20

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._UF_29 GC-01-020-1-20

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

11._UF_29 GC-01-020-1-20

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

12._UF_29 GC-01-020-1-20

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

14._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

15._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

16._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

17._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

18._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

19._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

20._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

21._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

22._UF_29

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

23._UF_29

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

24._UF_29

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

25._UF_29

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016

26._UF_29

97.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._UF_29

96.9 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

28._UF_29

96.2 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F454 T8
 Dapeng Zhang, 2016

29._UF_29 UF_29_Fld#_20_Plt#_5

54.4 %
79 shared markers

USDA-TARS, United States of America
Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240