SNP Profiles of CCN-10   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATAACTACAGAACTCTCTCTGGTTCTCT
1._CCN_16___
ATAACTACAGAACTCTCTCTGGTTCTCT
2._CCN_16___
ATAACTAC________CTCTGG__CT__
3._CCN_16___
ATAACTAC________CTCTGG__CT__
4._CCN_16___
ATAACTAC________CTCTGG__CT__
5._CCN_16___
ATAACTAC________CTCTGG__CT__
6._CCN_16___
ATAACTACAGAACTCTCTCTGGTTCTCT
7._CCN_16___
ATAACTACAGAACTCTCTCTGGTTCTCT
8._CCN_16___
ATACCTAC________CTCTGG__CT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAACAAAGCCGGGGCCAGCTAGATATCC
1._CCN_16___
AAACAAAGCCGGGGCCAGCTAGATATCC
2._CCN_16___
______AG____GG________ATAT__
3._CCN_16___
______AG____GG________ATAT__
4._CCN_16___
______AG____GG________ATAT__
5._CCN_16___
______AG____GG________AT____
6._CCN_16___
AAACAAAG__GGGGCCAGCTAGATATCC
7._CCN_16___
AAACAAAGCCGGGGCCAGCTAGAT__CC
8._CCN_16___
______AG____GG________ATAT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGATTTGTGGCCACAGGTGGGGAACCAG
1._CCN_16___
CGATTTGTGGCCACAGGTGGGGAACCAG
2._CCN_16___
CGAT______CC__AGGT____AA____
3._CCN_16___
CGAT______CC__AGGT____AA____
4._CCN_16___
CGAT______CC__AGGT____AA____
5._CCN_16___
CGAT______CC__AGGT____AA____
6._CCN_16___
CGATTTGTGGCCACAGGTGGGGAACCAG
7._CCN_16___
CGATTTGTGGCCACAGGTGGGGAACCAG
8._CCN_16___
CGAT______CC__AGGT____AG____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGTATCCAGGGAGCTACGGAGGTTTCT
1._CCN_16___
CCGTATCCAGGGAGCTACGGAGGTTTCT
2._CCN_16___
______CC__________________CT
3._CCN_16___
______CC__________________CT
4._CCN_16___
______CC__________________CT
5._CCN_16___
______CC__________________CT
6._CCN_16___
CCGTATCCAGGGAGCTACGGAGGTTTCT
7._CCN_16___
CCGTATCCAGGGAGCTACGGAGGTTTCT
8._CCN_16___
______CC__________________CT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CTGTGGCGTTCTAAGGAGACAAGTGGAG
1._CCN_16___
CTGTGGCGTTCTAAGGAGACAAGTGGAG
2._CCN_16___
CT____CG__CTAAGG__ACAAGTGG__
3._CCN_16___
CT____CG__CTAAGG__ACAAGTGG__
4._CCN_16___
CT____CG__CTAAGG__ACAAGTGG__
5._CCN_16___
CT____CG__CTAAGG__ACAAGTGG__
6._CCN_16___
CTGTGGCGTTCTAAGGAGACAAGTGGAG
7._CCN_16___
CTGTGGCGTTCTAAGGAGACAAGTGGAG
8._CCN_16___
CT____CG__CTAAGG__ACAAGTGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
TTCGAACCCCGGCCAAAAACCGCCAAAC
1._CCN_16___
TTCGAACCCCGGCCAAAAACCGCCAAAC
2._CCN_16___
____AACC__________ACCG______
3._CCN_16___
____AACC__________ACCG______
4._CCN_16___
____AACC__________ACCG______
5._CCN_16___
____AACC__________ACCG______
6._CCN_16___
TTCGAACCCCGGCCAAAAACCGCCAAAC
7._CCN_16___
TTCGAACCCCGGCCAAAAACCGCCAAAC
8._CCN_16___
____AACC__________ACCG______
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
TTTTTTCTAGCCCCTTTTATGGX_XX_XX_X
1._CCN_16___
TTTTTTCTAGCCCCTTTTATGGX_XX_XX_X
2._CCN_16___
TTTTTT__AG__CCTTTT____X_XX_XX_X
3._CCN_16___
TTTTTT__AG__CCTTTT____X_XX_XX_X
4._CCN_16___
TTTTTT__AG__CCTTTT____X_XX_XX_X
5._CCN_16___
TTTTTT__AG__CCTTTT____X_XX_XX_X
6._CCN_16___
TTTTTTCTAGCCCCTTTTCCCCX_XX_XX_X
7._CCN_16___
TTTTTTCTAGCCCCTTTTCCCCX_XX_XX_X
8._CCN_16___
TTTTTT__AG__CCTTTT____X_XX_XX_X

Input profile: CCN_16 GC-01-011-1-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._CCN_16 GC-01-011-1-11

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._CCN_16

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1109a 1 > FP
 Dapeng Zhang, 2016

3._CCN_16

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1109a 7
 Dapeng Zhang, 2016

4._CCN_16

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1109a 3
 Dapeng Zhang, 2016

5._CCN_16

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1109a 6 > FP
 Dapeng Zhang, 2016

6._CCN_16 GC-01-11-1-11

97.9 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 9, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

7._CCN_16 GC-01-11-1-11

97.9 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 9, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

8._CCN_16

97.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240