SNP Profiles of TSH-565   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCTCCGGCTCTTTTTGGTTCTCTAT
1._TSH_565___
AAACCTCCGGCTCTTTTTGGTTCTCTAT
2._TSH_565___
AAACCTCCGGCTCTTTTTGGTTCTCTAT
3._TSH_565___
AAACCTCCGGCTCTTTTTGGTTCTCTAT
4._TSH_565___
AAACCTCCGGCTCTTTTTGGTTCTCTAT
5._TSH_565___
AAACCTCCGGCTCTTTTTGGTTCTCTAT
6._TSH_565___
AAACCTCCGGCTCTTTTTGGTTCTCTAT
7._TSH_565___
AAACCTCCGGCTCTTTTTGGTTCTCTAT
8._TSH_565___
AAACCTCCGGCTCTTTTTGGTTCTCTAT
9._TSH_565___
AAACCTCCGGCTCTTTTTGGTTCTCTAT
10._TSH_565___
AAACCTCCGGCTCTTTTTGGTTCTCTAT
11._TSH_565___
______CC__CC________________
12._TSH_565___
AAAC__CCGG__AGAA__GGAAAGAGAT
13._TSH_565___
AAAC__CCGG__AGAA__GGAAAGAGAT
14._TSH_565___
AAAC__CCGG__AGAA__GGAAAGAGAT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ACAAAGCGCGCGCTAACTAGAAAAGGCC
1._TSH_565___
ACAAAGCGCGCGCTAACTAGAAAAGGCC
2._TSH_565___
ACAAAGCGCGCGCTAACTAGAAAAGGCC
3._TSH_565___
ACAAAGCGCGCGCTAACTAGAAAAGGCC
4._TSH_565___
ACAAAGCGCGCGCTAACTAGAAAAGGCC
5._TSH_565___
ACAAAGCGCGCGCTAACTAGAAAAGGCC
6._TSH_565___
ACAAAGCGCGCGCTAACTAGAAAAGGCC
7._TSH_565___
ACAAAGCGCGCGCTAACTAGAAAAGGCC
8._TSH_565___
ACAAAGCGCGCGCTAACTAGAAAAGGCC
9._TSH_565___
ACAAAGCGCGCGCTAACTAGAAAAGGCC
10._TSH_565___
ACAAAGCGCGCGCTAACTAGAAAAGGCC
11._TSH_565___
____AGCT__________________CC
12._TSH_565___
ACAAAGCG__CGAGAGAGAGAAAACCGG
13._TSH_565___
ACAAAGCG__CGAGAGAGAGAAAACCGG
14._TSH_565___
ACAAAGCG__CGAGAGAGAGAAAACCGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATCTGTAGCGACAAGTGTGTAACTAGCC
1._TSH_565___
ATCTGTAGCGACAAGTGTGTAACTAGCC
2._TSH_565___
ATCTGTAGCGACAAGTGTGTAACTAGCC
3._TSH_565___
ATCTGTAGCGACAAGTGTGTAACTAGCC
4._TSH_565___
ATCTGTAGCGACAAGTGTGTAACTAGCC
5._TSH_565___
ATCTGTAGCGACAAGTGTGTAACTAGCC
6._TSH_565___
ATCTGTAGCGACAAGTGTGTAACTAGCC
7._TSH_565___
ATCTGTAGCGACAAGTGTGTAACTAGCC
8._TSH_565___
ATCTGTAGCGACAAGTGTGTAACTAGCC
9._TSH_565___
ATCTGTAGCGACAAGTGTGTAACTAGCC
10._TSH_565___
ATCTGTAGCGACAAGTGTGTAACTAGCC
11._TSH_565___
________CG__AA________CT____
12._TSH_565___
ATAGACAGCGACAAACACACAAAGAGGG
13._TSH_565___
ATAGACAGCGACAAACACACAAAGAGGG
14._TSH_565___
ATAGACAGCGACAAACACACAAAGAGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGATCCAGAGAACTACAGAGGTTTCTCT
1._TSH_565___
GGATCCAGAGAACTACAGAGGTTTCTCT
2._TSH_565___
GGATCCAGAGAACTACAGAGGTTTCTCT
3._TSH_565___
GGATCCAGAGAACTACAGAGGTTTCTCT
4._TSH_565___
GGATCCAGAGAACTACAGAGGTTTCTCT
5._TSH_565___
GGATCCAGAGAACTACAGAGGTTTCTCT
6._TSH_565___
GGATCCAGAGAACTACAGAGGTTTCTCT
7._TSH_565___
GGATCCAGAGAACTACAGAGGTTTCTCT
8._TSH_565___
GGATCCAGAGAACTACAGAGGTTTCTCT
9._TSH_565___
GGATCCAGAGAACTACAGAGGTTTCTCT
10._TSH_565___
GGATCCAGAG__CTACAGAGGTTTCTCT
11._TSH_565___
________AG__________________
12._TSH_565___
CC__GG__AGAAAG__AGAGACAGAGAG
13._TSH_565___
CC__GG__AGAAAG__AGAGACAGAGAG
14._TSH_565___
CC__GG__AGAAAG__AGAGACAGAGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTAGCGCTCCACCGAGACAAGTGTAGCC
1._TSH_565___
GTAGCGCTCCACCGAGACAAGTGTAGCC
2._TSH_565___
GTAGCGCTCCACCGAGACAAGTGTAGCC
3._TSH_565___
GTAGCGCTCCACCGAGACAAGTGTAGCC
4._TSH_565___
GTAGCGCTCCACCGAGACAAGTGTAGCC
5._TSH_565___
GTAGCGCTCCACCGAGACAAGTGTAGCC
6._TSH_565___
GTAGCGCTCCACCGAGACAAGTGTAGCC
7._TSH_565___
GTAGCGCTCCACCGAGACAAGTGTAGCC
8._TSH_565___
GTAGCGCTCCACCGAGACAAGTGTAGCC
9._TSH_565___
GTAGCGCTCCACCGAGACAAGTGTAGCC
10._TSH_565___
GTAGCGCTCCACCGAGACAAGTGTAGCC
11._TSH_565___
__AG____________ACAA__GTAG__
12._TSH_565___
ACAGCGAGGGACCGAGACAAACACAG__
13._TSH_565___
ACAGCGAGGGACCGAGACAAACACAG__
14._TSH_565___
ACAGCGAGGGACCGAGACAAACACAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAGCTACGGCCACAAACCGCTAACCTT
1._TSH_565___
CGAGCTACGGCCACAAACCGCTAACCTT
2._TSH_565___
CGAGCTACGGCCACAAACCGCTAACCTT
3._TSH_565___
CGAGCTACGGCCACAAACCGCTAACCTT
4._TSH_565___
CGAGCTACGGCCACAAACCGCTAACCTT
5._TSH_565___
CGAGCTACGGCCACAAACCGCTAACCTT
6._TSH_565___
CGAGCTACGGCCACAAACCGCTAACCTT
7._TSH_565___
CGAGCTACGGCCACAAACCGCTAACCTT
8._TSH_565___
CGAGCTACGGCCACAAACCGCTAACCTT
9._TSH_565___
CGAGCTACGGCCACAAACCGCTAACCTT
10._TSH_565___
CGAGCTACGGCCACAAACCGCTAACCTT
11._TSH_565___
__GG____________AACG____CC__
12._TSH_565___
____AGACGGCCAC__ACCGAGAACCAA
13._TSH_565___
____AGACGGCCAC__ACCGAGAACCAA
14._TSH_565___
____AGACGGCCAC__ACCGAGAACCAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCTCTAGCTCCGTCTATAGX_XX_XX_XX_X
1._TSH_565___
CTCTCTAGCTCCGTCTATAGX_XX_XX_XX_X
2._TSH_565___
CTCTCTAGCTCCGTCTATAGX_XX_XX_XX_X
3._TSH_565___
CTCTCTAGCTCCGTCTATAGX_XX_XX_XX_X
4._TSH_565___
CTCTCTAGCTCCGTCTATAGX_XX_XX_XX_X
5._TSH_565___
CTCTCTAGCTCCGTCTATAGX_XX_XX_XX_X
6._TSH_565___
CTCTCTAGCTCCGTCTATAGX_XX_XX_XX_X
7._TSH_565___
CTCTCTAGCTCCGTCTATAGX_XX_XX_XX_X
8._TSH_565___
CTCTCTAGCTCCGTCTATAGX_XX_XX_XX_X
9._TSH_565___
CTCTCTAGCTCCGTCTATAGX_XX_XX_XX_X
10._TSH_565___
CTCTCTAGCTCCGTCTATAGX_XX_XX_XX_X
11._TSH_565___
__CT____CT__GT______X_XX_XX_XX_X
12._TSH_565___
AG__AG____GGACAGATAGX_XX_XX_XX_X
13._TSH_565___
AG__AG____GGACAGATAGX_XX_XX_XX_X
14._TSH_565___
AG__AG____GGACAGATAGX_XX_XX_XX_X

Input profile: TSH_565 GC-01-005-1-05

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

1._TSH_565 GC-01-005-1-05

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

2._TSH_565 GC-01-005-1-05

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._TSH_565 GC-01-005-1-05

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

4._TSH_565 GC-01-005-1-05

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._TSH_565 GC-01-005-1-05

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._TSH_565 GC-01-005-1-05

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

7._TSH_565 GC-01-005-1-05

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._TSH_565 GC-01-005-1-05

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._TSH_565 GC-01-005-1-05

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._TSH_565 GC-01-005-1-05

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._TSH_565 RUQ_1741

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

12._TSH_565

54.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: FP 1
 Mars, 2018

13._TSH_565

54.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: FP 4
 Mars, 2018

14._TSH_565

54.4 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: FP 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240