SNP Profiles of EET 272 [ECU]   View Data

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 Key

 1234567891011121314
_Input profile
CTGGGGCCTTACCTTTCCCCAAAGCCAG
1._GC-03-032-3-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
2._EET_272_[ECU]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
3._GC-03-032-3-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
4._EET_272_[ECU]
CTAA__TTTTAA__TT__CTAA__CTAG
5._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
6._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
7._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
8._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
9._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
10._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
11._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
12._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
13._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
14._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
15._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
16._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
17._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
18._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
19._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
20._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
21._RUQ_6
____CC________TT__CC__GG__AG
22._RUQ_6
__AACCTT______TT________CTAG
23._GC-03-32-3-11
AGGGCCGGAAACAGAA____AAAGGGAG
24._RUQ_6
GGAAGGAAAAAAAAAA____AAGGAGAG
25._MITC-000381
GGAAGGAAAAAAAAAA____AAGGAGAG
 1516171819202122232425262728
_Input profile
CTAACCCTCCGGGGAGTTCCCGGTCCAC
1._GC-03-032-3-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
2._EET_272_[ECU]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
3._GC-03-032-3-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
4._EET_272_[ECU]
CTAAGGCTCT__GGAACTAA__GTCT__
5._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
6._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
7._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
8._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
9._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
10._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
11._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
12._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
13._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
14._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
15._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
16._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
17._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
18._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
19._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
20._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
21._RUQ_6
__________CCGGAA____GG____AC
22._RUQ_6
________TTCCGG__CTAAGGGTCTCC
23._GC-03-32-3-11
AGAACCAGGGCCCC__AACCCGAC__AC
24._RUQ_6
AGAAGGAGAGGGCC__AGAAGGAC__CC
25._MITC-000381
AGAAGGAGAGGGCC__AGAAGGAC__CC
 293031323334353637383940  
_Input profile
AAGGAACCAGCCAACCGGCCATGGX_XX_X
1._GC-03-032-3-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
2._EET_272_[ECU]
AAGGAACCAGCC__CCGGCCATGGX_XX_X
3._GC-03-032-3-11
AAGGAACCAGCC__CCGGCCATGGX_XX_X
4._EET_272_[ECU]
AAAG__CTAACCAACT__AC__GGX_XX_X
5._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
6._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
7._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
8._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
9._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
10._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
11._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
12._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
13._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
14._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
15._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
16._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
17._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
18._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
19._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
20._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
21._RUQ_6
________AA________AC____X_XX_X
22._RUQ_6
AA__AACTAACCAACTGGAC____X_XX_X
23._GC-03-32-3-11
__GGAAGGAGGGACGGCCCCATGGX_XX_X
24._RUQ_6
__GGAAAGAAGGAAAGCCACTTGGX_XX_X
25._MITC-000381
__GGAAAGAAGGAAAGCCACTTGGX_XX_X

Input profile: EET_272_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

1._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._EET_272_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._EET_272_[ECU] GC-03-032-3-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._EET_272_[ECU]

66.7 %
30 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

5._EET_272_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

6._EET_272_[ECU] GC-03-032-3-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

7._EET_272_[ECU] GC-03-032-3-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._EET_272_[ECU] GC-03-032-3-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

9._EET_272_[ECU] GC-03-032-3-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._EET_272_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._EET_272_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

12._EET_272_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

13._EET_272_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

14._EET_272_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

15._EET_272_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

16._EET_272_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

17._EET_272_[ECU] GC-03-032-3-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._EET_272_[ECU] GC-03-032-3-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

19._EET_272_[ECU] GC-03-032-3-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

20._EET_272_[ECU] GC-03-032-3-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

21._EET_272_[ECU] RUQ_6

62.5 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._EET_272_[ECU] RUQ_6

56.3 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._EET_272_[ECU] GC-03-32-3-11

47.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

24._EET_272_[ECU] RUQ_6

35.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

25._EET_272_[ECU] MITC-000381

35.7 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25