SNP Profiles of EET 272   View Data

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 Key

 1234567891011121314
_Input profile
CCAACCTTTTAATTTTCCCCAAGGCTAG
1._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
2._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
3._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
4._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
5._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
6._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
7._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
8._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
9._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
10._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
11._EET_272_[ECU]
CCAACCTTTTAATTTTCCCCAAGGCTAG
12._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
13._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
14._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
15._GC-03-032-3-11
CCAACCTTTTAATTTTCCCCAAGGCTAG
16._RUQ_6
__AACCTT______TT________CTAG
17._RUQ_6
____CC________TT__CC__GG__AG
18._EET_272_[ECU]
CTAA__TTTTAA__TT__CTAA__CTAG
19._EET_272_[ECU]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
20._GC-03-032-3-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
21._EET_272_[ECU]
CTGGGGCCTTACCTTTCCCCAAAGCCAG
22._GC-03-032-3-11
CTGGGGCCTTACCTTTCCCCAAAGCCAG
23._RUQ_6
GGAAGGAAAAAAAAAA____AAGGAGAG
24._MITC-000381
GGAAGGAAAAAAAAAA____AAGGAGAG
25._GC-03-32-3-11
AGGGCCGGAAACAGAA____AAAGGGAG
 1516171819202122232425262728
_Input profile
CTAAGGCTCTCCGGAACTAAGGGTCTCC
1._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
2._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
3._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
4._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
5._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
6._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
7._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
8._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
9._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
10._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
11._EET_272_[ECU]
CTAAGGCTCTCCGGAACTAAGGGTCTCC
12._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
13._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
14._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
15._GC-03-032-3-11
CTAAGGCTCTCCGGAACTAAGGGTCTCC
16._RUQ_6
________TTCCGG__CTAAGGGTCTCC
17._RUQ_6
__________CCGGAA____GG____AC
18._EET_272_[ECU]
CTAAGGCTCT__GGAACTAA__GTCT__
19._EET_272_[ECU]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
20._GC-03-032-3-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
21._EET_272_[ECU]
CTAACCCTCCGGGGAGTTCCCGGTCCAC
22._GC-03-032-3-11
CTAACCCTCCGGGGAGTTCCCGGTCCAC
23._RUQ_6
AGAAGGAGAGGGCC__AGAAGGAC__CC
24._MITC-000381
AGAAGGAGAGGGCC__AGAAGGAC__CC
25._GC-03-32-3-11
AGAACCAGGGCCCC__AACCCGAC__AC
 293031323334353637383940  
_Input profile
AAGGAACTAACCAACTGGACTTGGX_XX_X
1._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
2._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
3._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
4._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
5._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
6._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
7._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
8._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
9._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
10._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
11._EET_272_[ECU]
AAGGAACTAACCAACTGGACTTGGX_XX_X
12._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
13._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
14._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
15._GC-03-032-3-11
AAGGAACTAACCAACTGGACTTGGX_XX_X
16._RUQ_6
AA__AACTAACCAACTGGAC____X_XX_X
17._RUQ_6
________AA________AC____X_XX_X
18._EET_272_[ECU]
AAAG__CTAACCAACT__AC__GGX_XX_X
19._EET_272_[ECU]
AAGGAACCAGCCAACCGGCCATGGX_XX_X
20._GC-03-032-3-11
AAGGAACCAGCCAACCGGCCATGGX_XX_X
21._EET_272_[ECU]
AAGGAACCAGCC__CCGGCCATGGX_XX_X
22._GC-03-032-3-11
AAGGAACCAGCC__CCGGCCATGGX_XX_X
23._RUQ_6
__GGAAAGAAGGAAAGCCACTTGGX_XX_X
24._MITC-000381
__GGAAAGAAGGAAAGCCACTTGGX_XX_X
25._GC-03-32-3-11
__GGAAGGAGGGACGGCCCCATGGX_XX_X

Input profile: EET_272_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

2._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

7._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

8._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

9._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

10._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

11._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

12._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

15._EET_272_[ECU] GC-03-032-3-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

16._EET_272_[ECU] RUQ_6

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._EET_272_[ECU] RUQ_6

95.8 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

18._EET_272_[ECU]

95 %
30 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

19._EET_272_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

20._EET_272_[ECU] GC-03-032-3-11

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

21._EET_272_[ECU]

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

22._EET_272_[ECU] GC-03-032-3-11

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

23._EET_272_[ECU] RUQ_6

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._EET_272_[ECU] MITC-000381

48.6 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

25._EET_272_[ECU] GC-03-32-3-11

34.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25