SNP Profiles of EET 19   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCGCTCTAACTGTCTCTAAAGCCAG
1._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
2._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
3._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
4._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
5._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
6._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
7._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
8._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
9._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
10._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
11._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
12._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
13._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
14._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
15._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
16._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
17._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
18._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
19._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
20._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
21._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
22._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
23._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
24._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
25._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
26._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
27._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
28._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
29._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
30._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
31._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
32._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
33._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
34._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
35._EET_19_[ECU]___
CCAGCGCTCTAACTGTCTCTAAAGCCAG
36._EET_19_[ECU]___
__AGCGCT______GT________CCAG
37._EET_19_[ECU]___
CCAGCGCTCTACCTGTCTCTAAAGCCAG
38._EET_19_[ECU]___
CCAGCGCTCTACCTGTCTCTAAAGCCAG
39._EET_19_[ECU]___
CCAGCGCTCTACCTGTCTCTAAAGCCAG
40._EET_19_[ECU]___
____CG________GT__CT__AG__AG
41._EET_19_[ECU]___
____CG__________________CC__
42._EET_19_[ECU]___
GGAGCGAAAGACAGCC____AAAGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTATGGCTCTGGGGAGTTCCCGGGCTGG
1._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
2._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
3._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
4._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
5._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
6._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
7._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
8._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
9._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
10._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
11._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
12._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
13._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
14._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
15._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
16._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
17._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
18._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
19._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
20._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
21._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
22._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
23._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
24._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
25._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
26._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
27._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
28._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
29._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
30._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
31._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
32._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
33._EET_19_[ECU]___
TTATGGCTCTGGGGAGTTCCCGGGCTGG
34._EET_19_[ECU]___
TTATGGCTCTGGGGAG__CCCGGGCTGG
35._EET_19_[ECU]___
TTATGGCTCTGGGGAG__CCCGGGCTGG
36._EET_19_[ECU]___
________TTGGGG__TTCCCGGGCTGG
37._EET_19_[ECU]___
TTATGGCTCTGGGGGGTTCCCGGGCTGG
38._EET_19_[ECU]___
TTATGGCTCTGGGGGGTTCCCGGGCTGG
39._EET_19_[ECU]___
TTATGGCTCTGGGGGGTTCCCGGGCTGG
40._EET_19_[ECU]___
__________GGGGGG__CCCG______
41._EET_19_[ECU]___
TT______CTCC______CCCG______
42._EET_19_[ECU]___
AGATGGAGAGCGCC__GGCCCGAC____
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
1._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
2._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
3._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
4._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
5._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
6._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
7._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
8._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
9._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
10._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
11._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
12._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
13._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
14._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
15._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
16._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
17._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
18._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
19._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
20._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
21._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
22._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
23._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
24._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
25._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
26._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
27._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
28._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
29._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
30._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
31._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
32._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
33._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
34._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
35._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
36._EET_19_[ECU]___
__ATCCAGCCCCCTGTCC____X_XX_XX_X
37._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
38._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
39._EET_19_[ECU]___
AGATCCAGCCCCCTGTCCATCGX_XX_XX_X
40._EET_19_[ECU]___
______AG________CC____X_XX_XX_X
41._EET_19_[ECU]___
__AT__AGGGCCCT__CC____X_XX_XX_X
42._EET_19_[ECU]___
AGATAGAACGCCAACCCCATCGX_XX_XX_X

Input profile: EET_19_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 5437 3
 Dapeng Zhang, 2016

1._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

4._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

5._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

8._EET_19_[ECU] GC-05-184-4-37

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 1
 Dapeng Zhang, 2016

10._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

14._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 5
 Dapeng Zhang, 2016

19._EET_19_[ECU] GC-08-085-2-08

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

20._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 13
 Dapeng Zhang, 2016

21._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 12
 Dapeng Zhang, 2016

22._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 11
 Dapeng Zhang, 2016

23._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 10
 Dapeng Zhang, 2016

24._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 9
 Dapeng Zhang, 2016

25._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 8
 Dapeng Zhang, 2016

26._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 7
 Dapeng Zhang, 2016

27._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 6
 Dapeng Zhang, 2016

28._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 4
 Dapeng Zhang, 2016

29._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 3
 Dapeng Zhang, 2016

30._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 2
 Dapeng Zhang, 2016

31._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8208 1
 Dapeng Zhang, 2016

32._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 4 > FP
 Dapeng Zhang, 2016

33._EET_19_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 5
 Dapeng Zhang, 2016

34._EET_19_[ECU] GC-05-184-4-37

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

35._EET_19_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5437 2 > FP
 Dapeng Zhang, 2016

36._EET_19_[ECU] RUQ_1630

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

37._EET_19_[ECU]

97.4 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

38._EET_19_[ECU] RUQ_1630

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

39._EET_19_[ECU]

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F462 T9
 Dapeng Zhang, 2016

40._EET_19_[ECU] RUQ_1630

95.8 %
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

41._EET_19_[ECU] RUQ_1630

84.6 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

42._EET_19_[ECU] MITC-000062

48.5 %
34 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25