SNP Profiles of C SUL 7   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CTAGCGCTCTACCTGTCTCTATAGCCAG
1._GC-08-261-8-29
CCGGCGTTCT__CCGGCTCCAAAGCTAA
2._C_SUL_7
CCGGCGTTCT__CCGGCTCCAAAGCTAA
3._C_SUL_7
CCGGCGTTCT__CCGGCTCCAAAGCTAA
4._GC-08-261-8-29
CCGGCGTTCT__CCGGCTCCAAAGCTAA
5._GC-08-261-8-29
CCGGCGTTCT__CCGGCTCCAAAGCTAA
6._GC-08-261-8-29
CCGGCGTTCT__CCGGCTCCAAAGCTAA
7._GC-08-261-8-29
CCGGCGTTCT__CCGGCTCCAAAGCTAA
8._C_SUL_7
CCGGCGTTCT__CCGGCTCCAAAGCTAA
9._C_SUL_7
CCGGCGTTCT__CCGGCTCCAAAGCTAA
10._C_SUL_7
CCGGCGTTCT__CCGGCTCCAAAGCTAA
11._C_SUL_7
CCAACCCTCCACTTGGCTCCAAGGCCAA
12._NA
CCAACCCTCCACTTGGCTCCAAGGCCAA
13._C_SUL_7
CCAACCCTCCACTTGGCTCCAAGGCCAA
14._NA
CCAACCCTCCACTTGGCTCCAAGGCCAA
15._NA
CCAACCCTCCACTTGGCTCCAAGGCCAA
16._NA
CCAACCCTCCACTTGGCTCCAAGGCCAA
17._NA
CCAACCCTCCACTTGGCTCCAAGGCCAA
18._C_SUL_7
CCAACCCTCCACTTGGCTCCAAGGCCAA
19._C_SUL_7
CCAACCCTCCACTTGGCTCCAAGGCCAA
20._C_SUL_7
CCAACCCTCCACTTGGCTCCAAGGCCAA
21._C_SUL_7
CCAACCCTCCACTTGGCTCCAAGGCCAA
 1516171819202122232425262728
_Input profile
TTATGGCTCTGGGGAGTTCCCGGTCTAC
1._GC-08-261-8-29
CCATCGCTCTCGGGAGCTACCCGGCTAC
2._C_SUL_7
CCATCGCTCTCGGGAGCTACCCGGCTAC
3._C_SUL_7
CCATCGCTCTCGGGAGCTACCCGGCTAC
4._GC-08-261-8-29
CCATCGCTCTCGGGAGCTACCCGGCTAC
5._GC-08-261-8-29
CCATCGCTCTCGGGAGCTACCCGGCTAC
6._GC-08-261-8-29
CCATCGCTCTCGGGAGCTACCCGGCTAC
7._GC-08-261-8-29
CCATCGCTCTCGGGAGCTACCCGGCTAC
8._C_SUL_7
CCATCGCTCTCGGGAGCTACCCGGCTAC
9._C_SUL_7
CCATCGCTCTCGGGAGCTACCCGGCTAC
10._C_SUL_7
CCATCGCTCTCGGGAGCTACCCGGCTAC
11._C_SUL_7
CCATGGCTTTCGGTAGCCCCCCGGCCAC
12._NA
__ATGG__TTCGGTAACCCCCCGGCCAC
13._C_SUL_7
__ATGG__TTCGGTAACCCCCCGGCCAC
14._NA
CCATGGCTTTCGGTAACCCCCCGGCCAC
15._NA
CCATGGCTTTCGGTAACCCCCCGGCCAC
16._NA
CCATGGCTTTCGGTAACCCCCCGGCCAC
17._NA
CCATGGCTTTCGGTAACCCCCCGGCCAC
18._C_SUL_7
CCATGGCTTTCGGTAACCCCCCGGCCAC
19._C_SUL_7
CCATGGCTTTCGGTAACCCCCCGGCCAC
20._C_SUL_7
CCATGGCTTTCGGTAACCCCCCGGCCAC
21._C_SUL_7
CCATGGCTTTCGGTAACCCCCCGGCCAC
 293031323334353637383940  
_Input profile
AGGGATCCAACGCCCTGTCCATCGX_XX_X
1._GC-08-261-8-29
GGGGAACTAACG__TTGGACATCGX_XX_X
2._C_SUL_7
GGGGAACTAACG__TTGGACATCGX_XX_X
3._C_SUL_7
GGGGAACTAACGACTTGGACATCGX_XX_X
4._GC-08-261-8-29
GGGGAACTAACGACTTGGACATCGX_XX_X
5._GC-08-261-8-29
GGGGAACTAACGACTTGGACATCGX_XX_X
6._GC-08-261-8-29
GGGGAACTAACGACTTGGACATCGX_XX_X
7._GC-08-261-8-29
GGGGAACTAACGACTTGGACATCGX_XX_X
8._C_SUL_7
GGGGAACTAACGACTTGGACATCGX_XX_X
9._C_SUL_7
GGGGAACTAACGACTTGGACATCGX_XX_X
10._C_SUL_7
GGGGAACTAACGACTTGGACATCGX_XX_X
11._C_SUL_7
GGGGAACTAACGCCTTGGACAAGGX_XX_X
12._NA
GGGGAACTAACGCCTTGGACAAGGX_XX_X
13._C_SUL_7
GGGGAACTAACGCCTTGGACAAGGX_XX_X
14._NA
GGGGAACTAACGCCTTGGACAAGGX_XX_X
15._NA
GGGGAACTAACGCCTTGGACAAGGX_XX_X
16._NA
GGGGAACTAACGCCTTGGACAAGGX_XX_X
17._NA
GGGGAACTAACGCCTTGGACAAGGX_XX_X
18._C_SUL_7
GGGGAACTAACGCCTTGGACAAGGX_XX_X
19._C_SUL_7
GGGGAACTAACGCCTTGGACAAGGX_XX_X
20._C_SUL_7
GGGGAACTAACGCCTTGGACAAGGX_XX_X
21._C_SUL_7
GGGGAACTAACGCCTTGGACAAGGX_XX_X

Input profile: C_SUL_7

 
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._C_SUL_7 GC-08-261-8-29

69.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._C_SUL_7

69.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._C_SUL_7

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 5
 Dapeng Zhang, 2016

4._C_SUL_7 GC-08-261-8-29

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._C_SUL_7 GC-08-261-8-29

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._C_SUL_7 GC-08-261-8-29

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._C_SUL_7 GC-08-261-8-29

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._C_SUL_7

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 3
 Dapeng Zhang, 2016

9._C_SUL_7

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 4
 Dapeng Zhang, 2016

10._C_SUL_7

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8829 7
 Dapeng Zhang, 2016

11._C_SUL_7

65 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P95 583
 Dapeng Zhang, 2016

12._C_SUL_7 NA

64.5 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._C_SUL_7

64.5 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 3
 Dapeng Zhang, 2016

14._C_SUL_7 NA

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._C_SUL_7 NA

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

16._C_SUL_7 NA

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._C_SUL_7 NA

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

18._C_SUL_7

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._C_SUL_7

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 5
 Dapeng Zhang, 2016

20._C_SUL_7

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 6
 Dapeng Zhang, 2016

21._C_SUL_7

63.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8129 7
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25