SNP Profiles of CRU 101/T4   View Data

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 Key

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_Input profile
CTAGCGCTCTAACTTTCCCTATAGCCAG
1._CRU_101
CTAGCGCTCTAACTTTCCCTATAGCCAG
2._CRU_101
CTAGCGCTCTAACTTTCCCTATAGCCAG
3._CRU_101
CTAGCGCTCTAACTTTCCCTATAGCCAG
4._CRU_101
CTAGCGCTCTAACTTTCCCTATAGCCAG
5._GC-05-164-4-17
CTAGCGCTCTAACTTTCCCTATAGCCAG
6._RUQ_1627
__AGCGCT______TT________CCAG
7._CRU_101
__AGCGCT__AACTTTCC__ATAG__AG
8._RUQ_1627
____CG________TT__CT__AG__AG
9._RUQ_1627
AGAGCGAGAGAAAGAA____ATAGGGAG
 1516171819202122232425262728
_Input profile
TTAAGGCTCCGGGGAATTCCCCGTTTCC
1._CRU_101
TTAAGGCTCCGGGGAATTCCCCGTTTCC
2._CRU_101
TTAAGGCTCCGGGGAATTCCCCGTTTCC
3._CRU_101
TTAAGGCTCCGGGGAATTCCCCGTTTCC
4._CRU_101
TTAAGGCTCCGGGGAATTCCCCGTTTCC
5._GC-05-164-4-17
TTAAGGCTCCGGGGAATTCCCCGTTTCC
6._RUQ_1627
________CCGGGG__TTCCCCGTTTCC
7._CRU_101
TTAAGGCTCCGGGGAGTTCCCCGTTTCC
8._RUQ_1627
__________GGGGAG__CCCC____CC
9._RUQ_1627
AAAAGGAGGGCCCC__AACCCCAC__CC
 293031323334353637383940  
_Input profile
AGAGAACCAACCAATTTTCCTTCGX_XX_X
1._CRU_101
AGAGAACCAACCAATTTTCCTTCGX_XX_X
2._CRU_101
AGAGAACCAACCAATTTTCCTTCGX_XX_X
3._CRU_101
AGAGAACCAACCAATTTTCCTTCGX_XX_X
4._CRU_101
AGAGAACCAACCAATTTTCCTTCGX_XX_X
5._GC-05-164-4-17
AGAGAACCAACCAATTTTCCTTCGX_XX_X
6._RUQ_1627
AG__AACCAACCAATTTTCC____X_XX_X
7._CRU_101
AGAGAACCAA__AATTTTCCTTCGX_XX_X
8._RUQ_1627
________AA________CC____X_XX_X
9._RUQ_1627
__AGAAGGAAGGAAAAAACCTTCGX_XX_X

Input profile: CRU_101

 
Mars Center for Cocoa Science, Brazil
Location: 5417 4 > FP
 Dapeng Zhang, 2016

1._CRU_101

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 3 > FP
 Dapeng Zhang, 2016

2._CRU_101

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 2 > FP
 Dapeng Zhang, 2016

3._CRU_101

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 1 > FP
 Dapeng Zhang, 2016

4._CRU_101

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._CRU_101 GC-05-164-4-17

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._CRU_101 RUQ_1627

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._CRU_101

98.6 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D91
 Dapeng Zhang, 2016

8._CRU_101 RUQ_1627

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

9._CRU_101 RUQ_1627

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25