SNP Profiles of CCN 16   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAACGCTTTAACCTTCTTTATAGCTAG
1._CCN_16
CTAACGCTTTAACCTTCTTTATAGCTAG
2._CCN_16
CTAACGCTTTAACCTTCTTTATAGCTAG
3._GC-01-11-1-11
CTAACGCTTTAACCTTCTTTATAGCTAG
4._GC-01-011-1-11
CTAACGCTTTAACCTTCTTTATAGCTAG
5._GC-01-011-1-11
CTAACGCTTTAACCTTCTTTATAGCTAG
6._CCN_16
CTAACGCTTTAACCTTCTTTATAGCTAG
7._GC-01-11-1-11
CTAACGCTTTAACCTTCTTTATAGCTAG
8._CCN_16
CTAGCGCTTTACCCTTCTTTATAGCTAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTATGGCCCTCGGGAATTACCCGTCTAC
1._CCN_16
TTATGGCCCTCGGGAATTACCCGTCTAC
2._CCN_16
TTATGGCCCTCGGGAATTACCCGTCTAC
3._GC-01-11-1-11
TTATGGCCCTCGGGAATTACCCGTCTAC
4._GC-01-011-1-11
TTATGGCCCTCGGGAATTACCCGTCTAC
5._GC-01-011-1-11
TTATGGCCCTCGGGAATTACCCGTCTAC
6._CCN_16
TTATGGCCCTCGGGAATTACCCGTCTAC
7._GC-01-11-1-11
TTATGGCCCTCGGGAATTACCCGTCTAC
8._CCN_16
TTATGGCCCTCGGGAATTACCCGTCTAC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGATCCAACGAACTGTACATGGX_XX_X
1._CCN_16
AGGGATCCAACGAACTGTACATGGX_XX_X
2._CCN_16
AGGGATCCAACGAACTGTACATGGX_XX_X
3._GC-01-11-1-11
AGGGATCCAACGAACTGTACATGGX_XX_X
4._GC-01-011-1-11
AGGGATCCAACGAACTGTACATGGX_XX_X
5._GC-01-011-1-11
AGGGATCCAACGAACTGTACATGGX_XX_X
6._CCN_16
AGGG__CCAACGAACTGTACATGGX_XX_X
7._GC-01-11-1-11
AGGG__CCAACGAACTGTACATGGX_XX_X
8._CCN_16
AGGGATCCAACGAACTGTACATGGX_XX_X

Input profile: CCN_16

 
Mars Center for Cocoa Science, Brazil
Location: 1109a 3
 Dapeng Zhang, 2016

1._CCN_16

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1109a 1 > FP
 Dapeng Zhang, 2016

2._CCN_16

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1109a 7
 Dapeng Zhang, 2016

3._CCN_16 GC-01-11-1-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 9, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

4._CCN_16 GC-01-011-1-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._CCN_16 GC-01-011-1-11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._CCN_16

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1109a 6 > FP
 Dapeng Zhang, 2016

7._CCN_16 GC-01-11-1-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 1, Rep: 9, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

8._CCN_16

97.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25