SNP Profiles of B 12 /1 [POU]   View Data

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 Key

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_Input profile
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
1._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
2._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
3._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
4._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
5._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
6._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
7._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
8._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
9._B_12_/1_[POU]
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
10._GC-05-093-2-44
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
11._RUQ_1541
_GGCGCT__GT____CCAG_
12._RUQ_1541
__CG___GT_CC_AG_AG_
13._RUQ_1541
CCGGCGCTTTCCGTTTCCTTAGCCAGCT
14._RUQ_1541
GGGGCGAGAAGGAC__TTAGGGAGAG
 1516171819202122232425262728
_Input profile
AAGGCTTTGGGTAACCCCGGGTCTCCAA
1._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
2._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
3._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
4._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
5._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
6._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
7._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
8._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
9._B_12_/1_[POU]
AAGGCTTTGGGTAACCCCGGGTCTCCAA
10._GC-05-093-2-44
AAGGCTTTGGGTAACCCCGGGTCTCCAA
11._RUQ_1541
___TTGGGT_CCCCGGGTCTCCAA
12._RUQ_1541
____GGGTAA_CCGG__CC_
13._RUQ_1541
AAGGCTCTGGGTAACCCCGGGTCTCCAA
14._RUQ_1541
AAGGAGAACCAC_GGCCGGAC_CC_
 2930313233343536373839   
_Input profile
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
1._B_12_/1_[POU]
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
2._B_12_/1_[POU]
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
3._B_12_/1_[POU]
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
4._GC-05-093-2-44
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
5._GC-05-093-2-44
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
6._GC-05-093-2-44
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
7._GC-05-093-2-44
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
8._B_12_/1_[POU]
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
9._B_12_/1_[POU]
AGTTCCAACCAA_GTCCAAGGX_XX_XX_X
10._GC-05-093-2-44
AGTTCCAACCAA_GTCCAAGGX_XX_XX_X
11._RUQ_1541
_TTCCAACCAACTGTCC__X_XX_XX_X
12._RUQ_1541
___AA____CC__X_XX_XX_X
13._RUQ_1541
AGTTCCAACCAACTGTCCAAGGX_XX_XX_X
14._RUQ_1541
AGTTGGAAGGAAAGACCCAAGGX_XX_XX_X

Input profile: B_12_/1_[POU]

 
Mars Center for Cocoa Science, Brazil
Location: 5244 4
 Dapeng Zhang, 2016

1._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 1 > FP
 Dapeng Zhang, 2016

2._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 5
 Dapeng Zhang, 2016

3._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._B_12_/1_[POU]

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F461 T10
 Dapeng Zhang, 2016

9._B_12_/1_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 3
 Dapeng Zhang, 2016

10._B_12_/1_[POU] GC-05-093-2-44

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._B_12_/1_[POU] RUQ_1541

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._B_12_/1_[POU] RUQ_1541

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

13._B_12_/1_[POU] RUQ_1541

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._B_12_/1_[POU] RUQ_1541

50 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25