SNP Profiles of B 12.1   View Data

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 Key

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_Input profile
CCGGCGCTTTCCCCGTTTCCTTAGCCAG
1._GC-05-093-2-44
CCGGCGCTTTCCCCGTTTCCTTAGCCAG
2._B_12_/1_[POU]
CCGGCGCTTTCCCCGTTTCCTTAGCCAG
3._B_12_/1_[POU]
CCGGCGCTTT__CCGTTTCCTTAGCCAG
4._B_12_/1_[POU]
CCGGCGCTTT__CCGTTTCCTTAGCCAG
5._B_12_/1_[POU]
CCGGCGCTTT__CCGTTTCCTTAGCCAG
6._GC-05-093-2-44
CCGGCGCTTT__CCGTTTCCTTAGCCAG
7._GC-05-093-2-44
CCGGCGCTTT__CCGTTTCCTTAGCCAG
8._GC-05-093-2-44
CCGGCGCTTT__CCGTTTCCTTAGCCAG
9._B_12_/1_[POU]
CCGGCGCTTT__CCGTTTCCTTAGCCAG
10._GC-05-093-2-44
CCGGCGCTTT__CCGTTTCCTTAGCCAG
11._RUQ_1541
__GGCGCT______GT________CCAG
12._RUQ_1541
____CG________GT__CC__AG__AG
13._RUQ_1541
CCGGCGCTTTCCCCGTTTCCTTAGCCAG
14._RUQ_1541
GGGGCGAGAACCGGAC____TTAGGGAG
 1516171819202122232425262728
_Input profile
CTAAGGCTTTGGGTAACCCCGGGTCTCC
1._GC-05-093-2-44
CTAAGGCTTTGGGTAACCCCGGGTCTCC
2._B_12_/1_[POU]
CTAAGGCTTTGGGTAACCCCGGGTCTCC
3._B_12_/1_[POU]
CTAAGGCTTTGGGTAACCCCGGGTCTCC
4._B_12_/1_[POU]
CTAAGGCTTTGGGTAACCCCGGGTCTCC
5._B_12_/1_[POU]
CTAAGGCTTTGGGTAACCCCGGGTCTCC
6._GC-05-093-2-44
CTAAGGCTTTGGGTAACCCCGGGTCTCC
7._GC-05-093-2-44
CTAAGGCTTTGGGTAACCCCGGGTCTCC
8._GC-05-093-2-44
CTAAGGCTTTGGGTAACCCCGGGTCTCC
9._B_12_/1_[POU]
CTAAGGCTTTGGGTAACCCCGGGTCTCC
10._GC-05-093-2-44
CTAAGGCTTTGGGTAACCCCGGGTCTCC
11._RUQ_1541
________TTGGGT__CCCCGGGTCTCC
12._RUQ_1541
__________GGGTAA__CCGG____CC
13._RUQ_1541
CTAAGGCTCTGGGTAACCCCGGGTCTCC
14._RUQ_1541
AGAAGGAGAACCAC__GGCCGGAC__CC
 293031323334353637383940  
_Input profile
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
1._GC-05-093-2-44
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
2._B_12_/1_[POU]
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
3._B_12_/1_[POU]
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
4._B_12_/1_[POU]
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
5._B_12_/1_[POU]
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
6._GC-05-093-2-44
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
7._GC-05-093-2-44
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
8._GC-05-093-2-44
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
9._B_12_/1_[POU]
AAAGTTCCAACCAA__GTCCAAGGX_XX_X
10._GC-05-093-2-44
AAAGTTCCAACCAA__GTCCAAGGX_XX_X
11._RUQ_1541
AA__TTCCAACCAACTGTCC____X_XX_X
12._RUQ_1541
________AA________CC____X_XX_X
13._RUQ_1541
AAAGTTCCAACCAACTGTCCAAGGX_XX_X
14._RUQ_1541
__AGTTGGAAGGAAAGACCCAAGGX_XX_X

Input profile: B_12_/1_[POU]

 
Mars Center for Cocoa Science, Brazil
Location: 5244 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._B_12_/1_[POU] GC-05-093-2-44

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._B_12_/1_[POU]

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F461 T10
 Dapeng Zhang, 2016

3._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 1 > FP
 Dapeng Zhang, 2016

4._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 5
 Dapeng Zhang, 2016

5._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 4
 Dapeng Zhang, 2016

6._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._B_12_/1_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 3
 Dapeng Zhang, 2016

10._B_12_/1_[POU] GC-05-093-2-44

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._B_12_/1_[POU] RUQ_1541

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._B_12_/1_[POU] RUQ_1541

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

13._B_12_/1_[POU] RUQ_1541

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._B_12_/1_[POU] RUQ_1541

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25