SNP Profiles of NA-33   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGCCTTTTAATTGTCCCCAAAGCCAG
1._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
2._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
3._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
4._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
5._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
6._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
7._AMAZ_3_/2___
CCAGCCTTTTAATTGTCCCCAAAGCCAG
8._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
9._AMAZ_3_/2___
CC__CCTTTTAATTTTCTCCAAGGCCAA
10._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
11._AMAZ_3_/2___
CC__CCTTTTAATTTTCTCCAAGGCCAA
12._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
13._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
14._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
15._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
16._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
17._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
18._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
19._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
20._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
21._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
22._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
23._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
24._AMAZ_3_/2___
CCAACCTT__AATTTTCTCCAAGGCCAA
25._AMAZ_3_/2___
CCAACCTTTT__TTTTCTCCAAGGCCAA
26._AMAZ_3_/2___
CCAACCTTTT__TTTTCTCCAAGGCCAA
27._AMAZ_3_/2___
CCAACCTT__AATTTTCTCCAAGGCCAA
28._AMAZ_3_/2___
CCAGCCTTTTAATTTTCTCCAAGGCTAA
29._AMAZ_3_/2___
CCAACCTTTTAATTTTCTCCAAGGCCAA
30._AMAZ_3_/2___
____CC________TT__CC__GG__AA
31._AMAZ_3_/2___
____CC________TT__CC__GG__AA
32._AMAZ_3_/2___
__AACC________TT________CCAA
33._AMAZ_3_/2___
GGAAGGAAAAAAAAAA____AAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGCCCTGGGGCTACGGGGCTCCAG
1._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
2._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
3._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
4._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
5._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
6._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
7._AMAZ_3_/2___
CTAACGCCCTGGGGCTACGGGGCTCCAG
8._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
9._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
10._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
11._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
12._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
13._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
14._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
15._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
16._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
17._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
18._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
19._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
20._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
21._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
22._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
23._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
24._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
25._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
26._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
27._AMAZ_3_/2___
CTATGGCTCCCGGTCCAA__GGCCCCAA
28._AMAZ_3_/2___
CTATGGCTCCCGGTCCAACCGGCCCCAA
29._AMAZ_3_/2___
CTATGGCTCCCGGTCCAACCGGCCCCAA
30._AMAZ_3_/2___
__________CGGT__AA______CC__
31._AMAZ_3_/2___
__________CGGT__AA______CC__
32._AMAZ_3_/2___
________CC__GTCCAACC__CCCC__
33._AMAZ_3_/2___
AGATGGAGGGCGACGGAACCCC__CC__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
1._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
2._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
3._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
4._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
5._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
6._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
7._AMAZ_3_/2___
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
8._AMAZ_3_/2___
GGATTTAAGGAA__GTAAATGGX_XX_XX_X
9._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
10._AMAZ_3_/2___
GGATTTAAGGAA__GTAAATGGX_XX_XX_X
11._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
12._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
13._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
14._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
15._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
16._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
17._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
18._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
19._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
20._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
21._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
22._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
23._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
24._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
25._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
26._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
27._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
28._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
29._AMAZ_3_/2___
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
30._AMAZ_3_/2___
______AA________AA____X_XX_XX_X
31._AMAZ_3_/2___
______AA________AA____X_XX_XX_X
32._AMAZ_3_/2___
__AT__AAGGAACCGTAA____X_XX_XX_X
33._AMAZ_3_/2___
GGATAAAACCAAGGACAAATGGX_XX_XX_X

Input profile: AMAZ_3_/2

 
Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

1._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

2._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016

7._AMAZ_3_/2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

8._AMAZ_3_/2 GC-03-022-2-11

67.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._AMAZ_3_/2 GC-03-022-2-11

67.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._AMAZ_3_/2

67.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

11._AMAZ_3_/2

67.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

12._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

13._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

14._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

15._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

17._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

18._AMAZ_3_/2

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

19._AMAZ_3_/2

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

20._AMAZ_3_/2

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

21._AMAZ_3_/2

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

22._AMAZ_3_/2

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

23._AMAZ_3_/2

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

24._AMAZ_3_/2 GC-03-022-2-11

66.2 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._AMAZ_3_/2 GC-03-022-2-11

66.2 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

26._AMAZ_3_/2

66.2 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016

27._AMAZ_3_/2

66.2 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

28._AMAZ_3_/2 RUQ_91

65.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._AMAZ_3_/2

65.4 %
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

30._AMAZ_3_/2 RUQ_91

59.1 %
11 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

31._AMAZ_3_/2 RUQ_91b

59.1 %
11 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

32._AMAZ_3_/2 RUQ_91

52.6 %
19 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

33._AMAZ_3_/2 RUQ_91

34.3 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25