SNP Profiles of AMAZ 3 /2   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCTTTTAATTTTCTCCAAGGCCAACT
1._GC-03-022-2-11
CCCCTTTTAATTTTCTCCAAGGCCAACT
2._GC-03-022-2-11
CCCCTTTTAATTTTCTCCAAGGCCAACT
3._GC-03-022-2-11
CCCCTTTTAATTTTCTCCAAGGCCAACT
4._GC-03-022-2-11
CCCCTTTTAATTTTCTCCAAGGCCAACT
5._GC-03-022-2-11
CCCCTTTTAATTTTCTCCAAGGCCAACT
6._GC-03-022-2-11
CCCCTTTTAATTTTCTCCAAGGCCAACT
7._GC-03-022-2-11
CCCCTTTTAATTTTCTCCAAGGCCAACT
8._AMAZ_3_/2
CCCCTTTTAATTTTCTCCAAGGCCAACT
9._AMAZ_3_/2
CCCCTTTTAATTTTCTCCAAGGCCAACT
10._AMAZ_3_/2
CCCCTTTTAATTTTCTCCAAGGCCAACT
11._AMAZ_3_/2
CCCCTTTTAATTTTCTCCAAGGCCAACT
12._AMAZ_3_/2
CCCCTTTTAATTTTCTCCAAGGCCAACT
13._AMAZ_3_/2
CCCCTTTTAATTTTCTCCAAGGCCAACT
14._AMAZ_3_/2
CCCCTTTTAATTTTCTCCAAGGCCAACT
15._GC-03-022-2-11
CCCCTT__AATTTTCTCCAAGGCCAACT
16._GC-03-022-2-11
CCCCTTTT__TTTTCTCCAAGGCCAACT
17._GC-03-022-2-11
CCCCTTTTAATTTTCTCCAAGGCCAACT
18._AMAZ_3_/2
CCCCTTTTAATTTTCTCCAAGGCCAACT
19._AMAZ_3_/2
CCCCTTTT__TTTTCTCCAAGGCCAACT
20._AMAZ_3_/2
CCCCTT__AATTTTCTCCAAGGCCAACT
21._RUQ_91
__CC________TT________CCAA__
22._RUQ_91
__CC________TT__CC__GG__AA__
23._RUQ_91b
__CC________TT__CC__GG__AA__
24._RUQ_91
CCCCTTTTAATTTTCTCCAAGGCTAACT
25._AMAZ_3_/2
CCCCTTTTAATTGTCCCCAAAGCCAGCT
26._GC-03-022-2-11
CCCCTTTTAATTGTCCCCAAAGCCAGCT
27._GC-03-022-2-11
CCCCTTTTAATTGTCCCCAAAGCCAGCT
28._GC-03-022-2-11
CCCCTTTTAATTGTCCCCAAAGCCAGCT
29._AMAZ_3_/2
CCCCTTTTAATTGTCCCCAAAGCCAGCT
30._AMAZ_3_/2
CCCCTTTTAATTGTCCCCAAAGCCAGCT
31._GC-03-022-2-11
CCCCTTTTAATTGTCCCCAAAGCCAGCT
32._AMAZ_3_/2
CCCCTTTTAATTGTCCCCAAAGCCAGCT
33._RUQ_91
GGGGAAAAAAAAAA____AAGGGGAAAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATGGCTCCCGGTAACCAAGGCCCCAAGG
1._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
2._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
3._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
4._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
5._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
6._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
7._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
8._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
9._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
10._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
11._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
12._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
13._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
14._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
15._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
16._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
17._GC-03-022-2-11
ATGGCTCCCGGTAACCAAGGCCCCAAGG
18._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
19._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
20._AMAZ_3_/2
ATGGCTCCCGGTAACCAAGGCCCCAAGG
21._RUQ_91
______CC__GT__CCAA__CCCC____
22._RUQ_91
________CGGTAA__AA____CC____
23._RUQ_91b
________CGGT____AA____CC____
24._RUQ_91
ATGGCTCCCGGTAACCAAGGCCCCAAGG
25._AMAZ_3_/2
AACGCCCTGGGGAACTACGGCTCCAGGG
26._GC-03-022-2-11
AACGCCCTGGGGAACTACGGCTCCAGGG
27._GC-03-022-2-11
AACGCCCTGGGGAACTACGGCTCCAGGG
28._GC-03-022-2-11
AACGCCCTGGGGAACTACGGCTCCAGGG
29._AMAZ_3_/2
AACGCCCTGGGGAACTACGGCTCCAGGG
30._AMAZ_3_/2
AACGCCCTGGGGAACTACGGCTCCAGGG
31._GC-03-022-2-11
AACGCCCTGGGG__CTACGGCTCCAGGG
32._AMAZ_3_/2
AACGCCCTGGGG__CTACGGCTCCAGGG
33._RUQ_91
ATGGAGGGCGAC__GGAACC__CC__GG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
1._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
2._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
3._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
4._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
5._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
6._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
7._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
8._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
9._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
10._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
11._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
12._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
13._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
14._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
15._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
16._GC-03-022-2-11
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
17._GC-03-022-2-11
ATTTAAGGAA__GTAAATGGX_XX_XX_XX_X
18._AMAZ_3_/2
ATTTAAGGAA__GTAAATGGX_XX_XX_XX_X
19._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
20._AMAZ_3_/2
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
21._RUQ_91
AT__AAGGAACCGTAA____X_XX_XX_XX_X
22._RUQ_91
____AA________AA____X_XX_XX_XX_X
23._RUQ_91b
____AA________AA____X_XX_XX_XX_X
24._RUQ_91
ATTTAAGGAACCGTAAATGGX_XX_XX_XX_X
25._AMAZ_3_/2
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
26._GC-03-022-2-11
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
27._GC-03-022-2-11
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
28._GC-03-022-2-11
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
29._AMAZ_3_/2
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
30._AMAZ_3_/2
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
31._GC-03-022-2-11
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
32._AMAZ_3_/2
ATCTGGCCACCTGGACTTGGX_XX_XX_XX_X
33._RUQ_91
ATAAAACCAAGGACAAATGGX_XX_XX_XX_X

Input profile: AMAZ_3_/2

 
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Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

1._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

7._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

8._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

9._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

10._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

12._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

13._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

14._AMAZ_3_/2

identical
38 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

15._AMAZ_3_/2 GC-03-022-2-11

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._AMAZ_3_/2 GC-03-022-2-11

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._AMAZ_3_/2

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

19._AMAZ_3_/2

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016

20._AMAZ_3_/2

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

21._AMAZ_3_/2 RUQ_91

identical
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._AMAZ_3_/2 RUQ_91

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
IMC
0.570 Nac
0.115 Par
0.146 Pur
0.097

23._AMAZ_3_/2 RUQ_91b

identical
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

24._AMAZ_3_/2 RUQ_91

98.7 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._AMAZ_3_/2

68.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

26._AMAZ_3_/2 GC-03-022-2-11

68.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._AMAZ_3_/2 GC-03-022-2-11

68.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

28._AMAZ_3_/2 GC-03-022-2-11

68.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

29._AMAZ_3_/2

68.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016

30._AMAZ_3_/2

68.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

31._AMAZ_3_/2 GC-03-022-2-11

67.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._AMAZ_3_/2

67.6 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

33._AMAZ_3_/2 RUQ_91

48.5 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1458 3TcSNP1442 4TcSNP1414 5TcSNP1350
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25