SNP Profiles of AMAZ 3 /2   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAACCTTTTAATTTTCTCCAAGGCCAA
1._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
2._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
3._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
4._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
5._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
6._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
7._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
8._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
9._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
10._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
11._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
12._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
13._GC-03-022-2-11
CCAACCTT__AATTTTCTCCAAGGCCAA
14._GC-03-022-2-11
CCAACCTTTT__TTTTCTCCAAGGCCAA
15._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
16._GC-03-022-2-11
CC__CCTTTTAATTTTCTCCAAGGCCAA
17._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
18._AMAZ_3_/2
CCAACCTTTT__TTTTCTCCAAGGCCAA
19._AMAZ_3_/2
CCAACCTT__AATTTTCTCCAAGGCCAA
20._AMAZ_3_/2
CC__CCTTTTAATTTTCTCCAAGGCCAA
21._RUQ_91
__AACC________TT________CCAA
22._RUQ_91
____CC________TT__CC__GG__AA
23._RUQ_91b
____CC________TT__CC__GG__AA
24._RUQ_91
CCAGCCTTTTAATTTTCTCCAAGGCTAA
25._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
26._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
27._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
28._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
29._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
30._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
31._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
32._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
33._RUQ_91
GGAAGGAAAAAAAAAA____AAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTATGGCTCCCGGTAACCAAGGCCCCAA
1._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
2._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
3._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
4._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
5._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
6._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
7._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
8._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
9._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
10._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
11._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
12._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
13._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
14._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
15._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
16._GC-03-022-2-11
CTATGGCTCCCGGTAACCAAGGCCCCAA
17._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
18._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
19._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
20._AMAZ_3_/2
CTATGGCTCCCGGTAACCAAGGCCCCAA
21._RUQ_91
________CC__GT__CCAA__CCCC__
22._RUQ_91
__________CGGTAA__AA____CC__
23._RUQ_91b
__________CGGT____AA____CC__
24._RUQ_91
CTATGGCTCCCGGTAACCAAGGCCCCAA
25._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGCTCCAG
26._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGCTCCAG
27._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGCTCCAG
28._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGCTCCAG
29._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGCTCCAG
30._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGCTCCAG
31._GC-03-022-2-11
CTAACGCCCTGGGG__CTACGGCTCCAG
32._AMAZ_3_/2
CTAACGCCCTGGGG__CTACGGCTCCAG
33._RUQ_91
AGATGGAGGGCGAC__GGAACC__CC__
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
1._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
2._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
3._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
4._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
5._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
6._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
7._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
8._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
9._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
10._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
11._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
12._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
13._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
14._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
15._GC-03-022-2-11
GGATTTAAGGAA__GTAAATGGX_XX_XX_X
16._GC-03-022-2-11
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
17._AMAZ_3_/2
GGATTTAAGGAA__GTAAATGGX_XX_XX_X
18._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
19._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
20._AMAZ_3_/2
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
21._RUQ_91
__AT__AAGGAACCGTAA____X_XX_XX_X
22._RUQ_91
______AA________AA____X_XX_XX_X
23._RUQ_91b
______AA________AA____X_XX_XX_X
24._RUQ_91
GGATTTAAGGAACCGTAAATGGX_XX_XX_X
25._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
26._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
27._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
28._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
29._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
30._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
31._GC-03-022-2-11
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
32._AMAZ_3_/2
GGATCTGGCCACCTGGACTTGGX_XX_XX_X
33._RUQ_91
GGATAAAACCAAGGACAAATGGX_XX_XX_X

Input profile: AMAZ_3_/2

 
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Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

1._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

7._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

8._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

9._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

10._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

12._AMAZ_3_/2

identical
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

13._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

18._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016

19._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

20._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

21._AMAZ_3_/2 RUQ_91

identical
18 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._AMAZ_3_/2 RUQ_91

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
IMC
0.570 Nac
0.115 Par
0.146 Pur
0.097

23._AMAZ_3_/2 RUQ_91b

identical
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

24._AMAZ_3_/2 RUQ_91

97.4 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._AMAZ_3_/2

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

26._AMAZ_3_/2 GC-03-022-2-11

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._AMAZ_3_/2 GC-03-022-2-11

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

28._AMAZ_3_/2 GC-03-022-2-11

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

29._AMAZ_3_/2

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016

30._AMAZ_3_/2

67.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

31._AMAZ_3_/2 GC-03-022-2-11

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._AMAZ_3_/2

67.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

33._AMAZ_3_/2 RUQ_91

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25