SNP Profiles of PA 137 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
GGATACGTCTACCCAGCCAAGGAGACCT
1._RUQ_1081
GGATACGTCTACCCAGCCAAGGAGACCT
2._RUQ_36
____ACGT__AC__AG__AA__AGACCT
3._RUQ_1081
____AC________AG________AC__
4._RUQ_1081
GGATACGTCTACCCAGCCAAGGAGACCT
5._PA_137_[PER]
GGATACGTCTACCCAGCCAAGGAGACCT
6._PA_137_[PER]
GGATACGTCTAC__AGCCAAGGAGACCT
7._PA_137_[PER]
GGATACGTCTAC__AGCCAAGGAGACCT
8._PA_137_[PER]
GGATACGTCTAC__AGCCAAGGAGACCT
9._RUQ_1081
____ACGTCTACCCAGCCAA__AGACCT
10._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
11._GC-05-009-1-09
GGATACGTCTAACCAGCCAAGGAGACCT
12._GC-05-009-1-09
GGATACGTCTAACCAGCCAAGGAGACCT
13._GC-05-009-1-09
GGATACGTCTAACCAGCCAAGGAGACCT
14._GC-05-009-1-09
GGATACGTCTAACCAGCCAAGGAGACCT
15._GC-05-009-1-09
GGATACGTCTAACCAGCCAAGGAGACCT
16._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
17._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
18._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
19._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
20._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
21._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
22._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
23._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
24._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
25._GC-05-117-3-19
GGATACGTCTAACCAGCCAAGGAGACCT
26._GC-05-117-3-19
GGATACGTCTAACCAGCCAAGGAGACCT
27._GC-05-117-3-19
GGATACGTCTAACCAGCCAAGGAGACCT
28._GC-05-117-3-19
GGATACGTCTAACCAGCCAAGGAGACCT
29._GC-05-117-3-19
GGATACGTCTAACCAGCCAAGGAGACCT
30._RUQ_36
____AC________AG________AA__
31._RUQ_36
GGATACGTCTACCGAG__AAGGAGACCT
32._PA137[PER]
____AC__CTACGGAG__AA________
33._RUQ_36
GGATACACAGACGGAGGGAAGG__AC__
34._MITC-000400
GGATACACAGACGGAGGGAAGG__AC__
35._PA_137_[PER]_Fld#_201_Plt#_2
GGATACACAGACGGAGGGAAGG__AC__
 1516171819202122232425262728
_Input profile
GGCGCCCTAAGGGGCCCTCGAACTAGCC
1._RUQ_1081
GGCGCCCTAAGGGGCCCTCGAACTAGCC
2._RUQ_36
GGCG______GG__CC________AG__
3._RUQ_1081
__CGCC__AAGGGG__________AG__
4._RUQ_1081
GGCGCCTTAAGGGGCCCTCGAACTAGCC
5._PA_137_[PER]
GGCGCCTTAAGGGGCCCTCGAACTAGCC
6._PA_137_[PER]
GGCGCCTTAA__GGCCCTCGAACTAGCC
7._PA_137_[PER]
GGCGCCTTAAGGGGCCCTCGAACTAGCC
8._PA_137_[PER]
GGCGCCTTAAGGGGCCCTCGAACTAGCC
9._RUQ_1081
GGCGCCTT__GGGGCC________AGCC
10._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
11._GC-05-009-1-09
GGCGCCTTAGGGGGCCCTCGAACTAGCC
12._GC-05-009-1-09
GGCGCCTTAGGGGGCCCTCGAACTAGCC
13._GC-05-009-1-09
GGCGCCTTAGGGGGCCCTCGAACTAGCC
14._GC-05-009-1-09
GGCGCCTTAGGGGGCCCTCGAACTAGCC
15._GC-05-009-1-09
GGCGCCTTAGGGGGCCCTCGAACTAGCC
16._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
17._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
18._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
19._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
20._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
21._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
22._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
23._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
24._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
25._GC-05-117-3-19
GGCGCCTTAGGGGGCCCTCGAACTAGCC
26._GC-05-117-3-19
GGCGCCTTAGGGGGCCCTCGAACTAGCC
27._GC-05-117-3-19
GGCGCCTTAGGGGGCCCTCGAACTAGCC
28._GC-05-117-3-19
GGCGCCTTAGGGGGCCCTCGAACTAGCC
29._GC-05-117-3-19
GGCGCCTTAGGGGGCCCTCGAACTAGCC
30._RUQ_36
__CGCC__AAGGGG__________AG__
31._RUQ_36
GGCG__TTAAGT__CCCTCGAACTAG__
32._PA137[PER]
__CGCC______CCCC______CT__CC
33._RUQ_36
CCCGCCAA__CCCCGGAGCGAAAGAGGG
34._MITC-000400
CCCGCCAA__CCCCGGAGCGAAAGAGGG
35._PA_137_[PER]_Fld#_201_Plt#_2
CCCGCCAA__CCCCGGAGCGAAAGAGGG
 293031323334353637383940  
_Input profile
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
1._RUQ_1081
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
2._RUQ_36
________________CT______X_XX_X
3._RUQ_1081
GG__CC__TT________CC____X_XX_X
4._RUQ_1081
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
5._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
6._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
7._PA_137_[PER]
GGAA__CCTTCTACTTCTCCGGCCX_XX_X
8._PA_137_[PER]
GGAA__CCTTCTACTTCTCCGGCCX_XX_X
9._RUQ_1081
________TT______CTCCGG__X_XX_X
10._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
11._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
12._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
13._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
14._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
15._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
16._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
17._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
18._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
19._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
20._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
21._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
22._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
23._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
24._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
25._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
26._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
27._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
28._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
29._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
30._RUQ_36
GG__CC__TT________CC____X_XX_X
31._RUQ_36
GGAA__CCGTCTACTTCTCGAGCCX_XX_X
32._PA137[PER]
__________________GG____X_XX_X
33._RUQ_36
GGAA____AAAGACAAAGGGGGGGX_XX_X
34._MITC-000400
GGAA____AAAGACAAAGGGGGGGX_XX_X
35._PA_137_[PER]_Fld#_201_Plt#_2
GGAA____AAAGACAAAGGGGGGGX_XX_X

Input profile: PA_137_[PER] RUQ_36

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._PA_137_[PER] RUQ_1081

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER] RUQ_36

identical
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_137_[PER] RUQ_1081

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._PA_137_[PER] RUQ_1081

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._PA_137_[PER]

98.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

6._PA_137_[PER]

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

7._PA_137_[PER]

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

8._PA_137_[PER]

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

9._PA_137_[PER] RUQ_1081

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._PA_137_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER] GC-05-009-1-09

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._PA_137_[PER] GC-05-009-1-09

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_137_[PER] GC-05-009-1-09

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._PA_137_[PER] GC-05-009-1-09

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_137_[PER] GC-05-009-1-09

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_137_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._PA_137_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

19._PA_137_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

21._PA_137_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

22._PA_137_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

23._PA_137_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

24._PA_137_[PER]

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

25._PA_137_[PER] GC-05-117-3-19

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._PA_137_[PER] RUQ_36

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

31._PA_137_[PER] RUQ_36

91.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

32._PA_137_[PER] PA137[PER]

76.9 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

33._PA_137_[PER] RUQ_36

48.6 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

48.6 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

48.6 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520