SNP Profiles of PA 137 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
GGATACGTCTACCGAGAAGGAGACCTGG
1._RUQ_36
____ACGT__AC__AGAA__AGACCTGG
2._PA_137_[PER]
GGATACGTCTAC__AGAAGGAGACCTGG
3._PA_137_[PER]
GGATACGTCTAC__AGAAGGAGACCTGG
4._PA_137_[PER]
GGATACGTCTAC__AGAAGGAGACCTGG
5._RUQ_1081
GGATACGTCTACCCAGAAGGAGACCTGG
6._PA_137_[PER]
GGATACGTCTACCCAGAAGGAGACCTGG
7._RUQ_36
GGATACGTCTACCCAGAAGGAGACCTGG
8._RUQ_1081
GGATACGTCTACCCAGAAGGAGACCTGG
9._PA137[PER]
____AC__CTACGGAGAA__________
10._PA_137_[PER]
GGATACGTCTAACCAGAAGGAGACCTGG
11._GC-05-009-1-09
GGATACGTCTAACCAGAAGGAGACCTGG
12._GC-05-009-1-09
GGATACGTCTAACCAGAAGGAGACCTGG
13._GC-05-009-1-09
GGATACGTCTAACCAGAAGGAGACCTGG
14._GC-05-009-1-09
GGATACGTCTAACCAGAAGGAGACCTGG
15._GC-05-009-1-09
GGATACGTCTAACCAGAAGGAGACCTGG
16._PA_137_[PER]
GGATACGTCTAACCAGAAGGAGACCTGG
17._PA_137_[PER]
GGATACGTCTAACCAGAAGGAGACCTGG
18._PA_137_[PER]
GGATACGTCTAACCAGAAGGAGACCTGG
19._PA_137_[PER]
GGATACGTCTAACCAGAAGGAGACCTGG
20._PA_137_[PER]
GGATACGTCTAACCAGAAGGAGACCTGG
21._PA_137_[PER]
GGATACGTCTAACCAGAAGGAGACCTGG
22._PA_137_[PER]
GGATACGTCTAACCAGAAGGAGACCTGG
23._PA_137_[PER]
GGATACGTCTAACCAGAAGGAGACCTGG
24._PA_137_[PER]
GGATACGTCTAACCAGAAGGAGACCTGG
25._GC-05-117-3-19
GGATACGTCTAACCAGAAGGAGACCTGG
26._GC-05-117-3-19
GGATACGTCTAACCAGAAGGAGACCTGG
27._GC-05-117-3-19
GGATACGTCTAACCAGAAGGAGACCTGG
28._GC-05-117-3-19
GGATACGTCTAACCAGAAGGAGACCTGG
29._GC-05-117-3-19
GGATACGTCTAACCAGAAGGAGACCTGG
30._RUQ_1081
____ACGTCTACCCAGAA__AGACCTGG
31._RUQ_1081
____AC________AG______AC____
32._RUQ_36
____AC________AG______AA____
33._RUQ_36
GGATACACAGACGGAGAAGG__AC__CC
34._MITC-000400
GGATACACAGACGGAGAAGG__AC__CC
35._PA_137_[PER]_Fld#_201_Plt#_2
GGATACACAGACGGAGAAGG__AC__CC
 1516171819202122232425262728
_Input profile
CGTTAAGTCCCTCGAACTAGGGAACCGT
1._RUQ_36
CG____GGCC________AG________
2._PA_137_[PER]
CGTTAA__CCCTCGAACTAGGGAACCTT
3._PA_137_[PER]
CGTTAAGGCCCTCGAACTAGGGAACCTT
4._PA_137_[PER]
CGTTAAGGCCCTCGAACTAGGGAACCTT
5._RUQ_1081
CGTTAAGGCCCTCGAACTAGGGAACCTT
6._PA_137_[PER]
CGTTAAGGCCCTCGAACTAGGGAACCTT
7._RUQ_36
CGCTAAGGCCCTCGAACTAGGGAACCTT
8._RUQ_1081
CGCTAAGGCCCTCGAACTAGGGAACCTT
9._PA137[PER]
CG______CC______CT__________
10._PA_137_[PER]
CGTTAGGGCCCTCGAACTAGGGAACCTT
11._GC-05-009-1-09
CGTTAGGGCCCTCGAACTAGGGAACCTT
12._GC-05-009-1-09
CGTTAGGGCCCTCGAACTAGGGAACCTT
13._GC-05-009-1-09
CGTTAGGGCCCTCGAACTAGGGAACCTT
14._GC-05-009-1-09
CGTTAGGGCCCTCGAACTAGGGAACCTT
15._GC-05-009-1-09
CGTTAGGGCCCTCGAACTAGGGAACCTT
16._PA_137_[PER]
CGTTAGGGCCCTCGAACTAGGGAACCTT
17._PA_137_[PER]
CGTTAGGGCCCTCGAACTAGGGAACCTT
18._PA_137_[PER]
CGTTAGGGCCCTCGAACTAGGGAACCTT
19._PA_137_[PER]
CGTTAGGGCCCTCGAACTAGGGAACCTT
20._PA_137_[PER]
CGTTAGGGCCCTCGAACTAGGGAACCTT
21._PA_137_[PER]
CGTTAGGGCCCTCGAACTAGGGAACCTT
22._PA_137_[PER]
CGTTAGGGCCCTCGAACTAGGGAACCTT
23._PA_137_[PER]
CGTTAGGGCCCTCGAACTAGGGAACCTT
24._PA_137_[PER]
CGTTAGGGCCCTCGAACTAGGGAACCTT
25._GC-05-117-3-19
CGTTAGGGCCCTCGAACTAGGGAACCTT
26._GC-05-117-3-19
CGTTAGGGCCCTCGAACTAGGGAACCTT
27._GC-05-117-3-19
CGTTAGGGCCCTCGAACTAGGGAACCTT
28._GC-05-117-3-19
CGTTAGGGCCCTCGAACTAGGGAACCTT
29._GC-05-117-3-19
CGTTAGGGCCCTCGAACTAGGGAACCTT
30._RUQ_1081
CGTT__GGCC________AG______TT
31._RUQ_1081
CG__AAGG__________AGGG____TT
32._RUQ_36
CG__AAGG__________AGGG____TT
33._RUQ_36
CGAA__CCGGAGCGAAAGAGGGAA__AA
34._MITC-000400
CGAA__CCGGAGCGAAAGAGGGAA__AA
35._PA_137_[PER]_Fld#_201_Plt#_2
CGAA__CCGGAGCGAAAGAGGGAA__AA
 29303132333435       
_Input profile
CTACTTCTCGAGCCX_XX_XX_XX_XX_XX_XX_X
1._RUQ_36
______CT______X_XX_XX_XX_XX_XX_XX_X
2._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
3._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
4._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
5._RUQ_1081
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
6._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
7._RUQ_36
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
8._RUQ_1081
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
9._PA137[PER]
________GG____X_XX_XX_XX_XX_XX_XX_X
10._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
11._GC-05-009-1-09
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
12._GC-05-009-1-09
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
13._GC-05-009-1-09
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
14._GC-05-009-1-09
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
15._GC-05-009-1-09
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
16._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
17._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
18._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
19._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
20._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
21._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
22._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
23._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
24._PA_137_[PER]
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
25._GC-05-117-3-19
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
26._GC-05-117-3-19
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
27._GC-05-117-3-19
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
28._GC-05-117-3-19
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
29._GC-05-117-3-19
CTACTTCTCCGGCCX_XX_XX_XX_XX_XX_XX_X
30._RUQ_1081
______CTCCGG__X_XX_XX_XX_XX_XX_XX_X
31._RUQ_1081
________CC____X_XX_XX_XX_XX_XX_XX_X
32._RUQ_36
________CC____X_XX_XX_XX_XX_XX_XX_X
33._RUQ_36
AGACAAAGGGGGGGX_XX_XX_XX_XX_XX_XX_X
34._MITC-000400
AGACAAAGGGGGGGX_XX_XX_XX_XX_XX_XX_X
35._PA_137_[PER]_Fld#_201_Plt#_2
AGACAAAGGGGGGGX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_137_[PER] RUQ_36

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._PA_137_[PER] RUQ_36

96.4 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_137_[PER]

95.5 %
33 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

3._PA_137_[PER]

94.1 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

4._PA_137_[PER]

94.1 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

5._PA_137_[PER] RUQ_1081

92.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_137_[PER]

92.9 %
35 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

7._PA_137_[PER] RUQ_36

91.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._PA_137_[PER] RUQ_1081

91.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_137_[PER] PA137[PER]

90 %
10 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

10._PA_137_[PER]

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

11._PA_137_[PER] GC-05-009-1-09

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._PA_137_[PER] GC-05-009-1-09

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_137_[PER] GC-05-009-1-09

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._PA_137_[PER] GC-05-009-1-09

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_137_[PER] GC-05-009-1-09

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_137_[PER]

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._PA_137_[PER]

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

18._PA_137_[PER]

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

19._PA_137_[PER]

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

20._PA_137_[PER]

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

21._PA_137_[PER]

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

22._PA_137_[PER]

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

23._PA_137_[PER]

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

24._PA_137_[PER]

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

25._PA_137_[PER] GC-05-117-3-19

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

90 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._PA_137_[PER] RUQ_1081

87.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._PA_137_[PER] RUQ_1081

85 %
10 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

32._PA_137_[PER] RUQ_36

80 %
10 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

33._PA_137_[PER] RUQ_36

53.2 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

34._PA_137_[PER] MITC-000400

53.2 %
31 shared markers

USDA-SHRS, United States of America
 Mars, 2018

35._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

53.2 %
31 shared markers

USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP619 17TcSNP645 18TcSNP723 19TcSNP891 20TcSNP917
21TcSNP929 22TcSNP953 23TcSNP994 24TcSNP998 25TcSNP1062
26TcSNP1075 27TcSNP1165 28TcSNP1253 29TcSNP1270 30TcSNP1350
31TcSNP1414 32TcSNP1442 33TcSNP1458 34TcSNP1484 35TcSNP1520