SNP Profiles of GU 255 /P   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGTTACGGCTACCCAGCTATGGAACCCC
1._ICS_39___
____AC________AG________CC__
2._ICS_39___
GGATACGTCTACCGAGCTATGGAGCCCT
3._ICS_39___
GGATACGTCTACCGAGCTATGGAGCCCT
4._ICS_39___
GGATACGTCTACCGAGCTATGGAGCCCT
5._ICS_39___
GGATACGTCTACCGAGCTATGGAGCCCT
6._ICS_39___
GGATACGTCTACCGAGCTATGGAGCCCT
7._ICS_39___
GGATACGTCTACCGAGCTATGGAGCCCT
8._ICS_39___
GGATACGTCTACCGAGCTATGGAGCCCT
9._ICS_39___
GGATACGTCTACCGAGCTATGGAGCCCT
10._ICS_39___
GGATACGTCTACCGAGCTATGGAGCCCT
11._ICS_39___
GGATACGTCTACCGAGCTATGGAGCCCT
12._ICS_39___
GGATACGTCTACCGAGCTATGGAGCCCT
13._ICS_39___
GGATACGTCTACCGAGCTATGGAGCCCT
14._ICS_39___
GGATACGTCTACCGAGCTATGGAGCCCT
15._ICS_39___
GGATACGTCT__CGAGCTATGGAGCCCT
16._ICS_39___
GGATACGTCT__CGAGCTATGGAGCCCT
17._ICS_39___
GGATACGTCTACGGAGCTATAGAGCCCT
18._ICS_39___
GGTTACCCAGACGGAGAGATGG__CC__
19._ICS_39___
GGATACACAGACCGAGAGATGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GTGGAACCAAGGCCCCCTGGATTTAGCT
1._ICS_39___
__GGAA__AAGGCC__________AG__
2._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
3._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
4._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
5._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
6._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
7._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
8._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
9._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
10._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
11._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
12._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
13._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
14._ICS_39___
GTCCACCTAGGTCGCCTTGGAACTAACT
15._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
16._ICS_39___
GTCCACCTGGGTCGCCTTGGAACTAACT
17._ICS_39___
GTCCACCTAGGTCGCCTTGGAACTAACT
18._ICS_39___
ACGGAAGG__CCGGGGAGGGATAAAGAG
19._ICS_39___
ACCGACAG__AACGGGAAGGAAAGAAAG
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGAACCCCTTTTACTTTTCCAGCCX_XX_X
1._ICS_39___
AG__CC__TT________CC____X_XX_X
2._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
3._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
4._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
5._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
6._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
7._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
8._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
9._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
10._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
11._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
12._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
13._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
14._ICS_39___
AAAACTCTGTCCAATTCTGGAGCTX_XX_X
15._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
16._ICS_39___
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
17._ICS_39___
AAAACTCTGTCCAATTCTGGAGCTX_XX_X
18._ICS_39___
AGAA____AAAA__AAAAGGAAGGX_XX_X
19._ICS_39___
AAAA____AAGGAAAAAGCCAGAGX_XX_X

Input profile: ICS_39 RUQ_1089

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._ICS_39 RUQ_1089

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._ICS_39

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 9
 Dapeng Zhang, 2016

3._ICS_39 GC-01-085-5-02

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

4._ICS_39 GC-01-085-5-02

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._ICS_39 GC-01-85-5-02

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL15
Notes: PL15 FP4
 Mars, 2018

6._ICS_39 GC-01-85-5-02

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

7._ICS_39 GC-01-85-5-02

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL5
Notes: PL5 FP2
 Mars, 2018

8._ICS_39 GC-01-085-5-02

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

9._ICS_39

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 12
 Dapeng Zhang, 2016

10._ICS_39

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 16
 Dapeng Zhang, 2016

11._ICS_39

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL14 F
 Dapeng Zhang, 2016

12._ICS_39

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL15 F
 Dapeng Zhang, 2016

13._ICS_39

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL5 FP
 Dapeng Zhang, 2016

14._ICS_39

66.3 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 9 C0200 2A
 Dapeng Zhang, 2016

15._ICS_39 GC-01-85-5-02

65.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL8
Notes: PL8 FP1
 Mars, 2018

16._ICS_39

65.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL8 FP
 Dapeng Zhang, 2016

17._ICS_39

63.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E361 T3
 Dapeng Zhang, 2016

18._ICS_39 RUQ_1089

45.6 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

19._ICS_39 ICS_39_Fld#_30_Plt#_2

44.3 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 30, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520