SNP Profiles of ICS 1   View Data

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 Key

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_Input profile
GGATAAGTCCAACGAGCTATGGAGCCCT
1._RUQ_847
GGATAAGTCCAACGAGCTATGGAGCCTT
2._NA
GGATAAGTCCAACGAGCTATGGAGCCTT
3._ICS_1
GGATAAGTCCAACGAGCTATGGAGCCTT
4._ICS_1
GGATAAGTCCAACGAGCTATGGAGCCTT
5._ICS_1
GGATAAGTCCAACGAGCTATGGAGCCTT
6._ICS_1
GGATAAGTCCAACGAGCTATGGAGCCTT
7._ICS_1
GGATAAGTCCAACGAGCTATGGAGCCTT
8._NA
GGATAAGTCCAACGAGCTATGGAGCCTT
9._NA
GGATAAGTCCAACGAGCTATGGAGCCTT
10._NA
GGATAAGTCCAACGAGCTATGGAGCCTT
11._NA
GGATAAGTCCAACGAGCTATGGAGCCTT
12._NA
GGATAAGTCCAACGAGCTATGGAGCCTT
13._ICS_1
GGATAAGTCCAACGAGCTATGGAGCCTT
14._ICS_1
GGATAAGTCCAACGAGCTATGG__CCTT
15._RUQ_847B
____AA________AG________AC__
16._RUQ_847
____AA________AG________AC__
17._RUQ_847
____AA__CCAACGAG__AT________
18._RUQ_847
____AAGTCCAACGAGCTAT__AGCCTT
19._ICS_1
GGATACGTCCAACCAACCAAGGAGAACT
20._ICS1
____CC__CTACCGAG__TT________
21._RUQ_847
GGATAAACGGAACGAGAGATGG__CC__
22._MITC-000297
GGATAAACGGAACGAGAGATGG__CC__
23._ICS_1_Fld#_73_Plt#_2
GGATAAACGGAACGAGAGATGG__CC__
 1516171819202122232425262728
_Input profile
TTCCACCTGGGTCGCCTTGGAATTAGTT
1._RUQ_847
TTCCACTTGGGTCGCCTTGGAATTAGTT
2._NA
TTCCACTTGGGTCGCCTTGGAATTAGTT
3._ICS_1
TTCCACTTGGGTCGCCTTGGAATTAGTT
4._ICS_1
TTCCACTTGGGTCGCCTTGGAATTAGTT
5._ICS_1
TTCCACTTGGGTCGCCTTGGAATTAGTT
6._ICS_1
TTCCACTTGGGTCGCCTTGGAATTAGTT
7._ICS_1
TTCCACTTGGGTCGCCTTGGAATTAGTT
8._NA
TTCCACTTGGGTCGCCTTGGAATTAGTT
9._NA
TTCCACTTGGGTCGCCTTGGAATTAGTT
10._NA
TTCCACTTGGGTCGCCTTGGAATTAGTT
11._NA
TTCCACTTGGGTCGCCTTGGAATTAGTT
12._NA
TT__ACTTGGGTCGCCTTGGAATTAGTT
13._ICS_1
TT__ACTTGGGTCGCCTTGGAATTAGTT
14._ICS_1
TTCCACTTGGGT__CCTTGGAATTAGTT
15._RUQ_847B
__CCAC__GGGTCG__________AG__
16._RUQ_847
__CCAC__GGGTCG__________AG__
17._RUQ_847
__CCAC______CGCC______TT__TT
18._RUQ_847
TTCCAATT__GTCGCC________AGTT
19._ICS_1
GGCGCCTTAAGGGGCCTTCGAATTAGCC
20._ICS1
__CCCC______CGCT______CT__CC
21._RUQ_847
AACCACAA__ACCGGGAAGGAAAAAGAA
22._MITC-000297
AACCACAA__ACCGGGAAGGAAAAAGAA
23._ICS_1_Fld#_73_Plt#_2
AACCACAA__ACCGGGAAGGAAAAAGAA
 293031323334353637383940  
_Input profile
AAAACTCTTTCCAATTCTGGAGTTX_XX_X
1._RUQ_847
AAAATTCTTTCCAATTCTGGAGTTX_XX_X
2._NA
AAAATTCTTTCCAATTCTGGAATTX_XX_X
3._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
4._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
5._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
6._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
7._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
8._NA
AAAATTCTTTCCAATTCTGGAATTX_XX_X
9._NA
AAAATTCTTTCCAATTCTGGAATTX_XX_X
10._NA
AAAATTCTTTCCAATTCTGGAATTX_XX_X
11._NA
AAAATTCTTTCCAATTCTGGAATTX_XX_X
12._NA
AAAATTCTTTCCAATTCTGGAATTX_XX_X
13._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
14._ICS_1
AAAATTCTTTCCAATTCTGGAATTX_XX_X
15._RUQ_847B
AA__TT__TT________GG____X_XX_X
16._RUQ_847
AA__TT__TT________GG____X_XX_X
17._RUQ_847
__________________CC____X_XX_X
18._RUQ_847
________TT______CTGGAA__X_XX_X
19._ICS_1
GGAACCCCTTTTACTTCTGGGGCTX_XX_X
20._ICS1
__________________CG____X_XX_X
21._RUQ_847
AAAA____AAGGAAAAAGCCAAAAX_XX_X
22._MITC-000297
AAAA____AAGGAAAAAGCCAAAAX_XX_X
23._ICS_1_Fld#_73_Plt#_2
AAAA____AAGGAAAAAGCCAAAAX_XX_X

Input profile: ICS_1 RUQ_847

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._ICS_1 RUQ_847

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._ICS_1 NA

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

3._ICS_1

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

4._ICS_1

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

5._ICS_1

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

6._ICS_1

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

7._ICS_1

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._ICS_1 NA

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._ICS_1 NA

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._ICS_1 NA

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._ICS_1 NA

95 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._ICS_1 NA

94.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._ICS_1

94.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

14._ICS_1

94.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

15._ICS_1 RUQ_847B

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

16._ICS_1 RUQ_847

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._ICS_1 RUQ_847

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

18._ICS_1 RUQ_847

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._ICS_1

65 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._ICS_1 ICS1

57.7 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

21._ICS_1 RUQ_847

52.9 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._ICS_1 MITC-000297

52.9 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

23._ICS_1 ICS_1_Fld#_73_Plt#_2

52.9 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520