SNP Profiles of UF 712 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
1._RUQ_1683	__	__	CC	__	__	__	__	__	__	__	__	AA	__	__
2._UF_712	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
3._RUQ_1638	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
4._RUQ_1638	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
5._RUQ_1683	__	__	CC	GG	TT	CC	CC	CC	TT	__	GG	AA	CC	GG
6._RUQ_1638	__	__	CC	GG	TT	CC	CC	CC	TT	__	GG	AA	CC	GG
7._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
8._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
9._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
10._UF_712	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
11._UF_712	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
12._UF_712	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
13._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
14._UF_712	CC	AA	CC	GG	TT	CC	CC	CC	TT	AA	GG	AA	CC	GG
15._RUQ_1683	CC	AA	CC	CC	AA	CC	GG	GG	TT	AA	__	AA	__	CC
16._MITC-000350	CC	AA	CC	CC	AA	CC	GG	GG	TT	AA	__	AA	__	CC
17._MITC-000039	CC	AA	CC	CC	AA	CC	GG	GG	TT	AA	__	AA	__	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	TT	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG	AT
1._RUQ_1683	GG	__	__	GG	GG	GG	__	__	__	__	AA	__	GG	__
2._UF_712	GG	CC	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG	AT
3._RUQ_1638	GG	CC	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG	AT
4._RUQ_1638	GG	CC	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG	AT
5._RUQ_1683	GG	CC	CT	__	GG	GG	TT	__	__	__	AA	CC	__	__
6._RUQ_1638	GG	CC	CT	__	GG	GG	TT	__	__	__	AA	CC	__	__
7._GC-01-089-5-06	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
8._GC-01-089-5-06	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
9._GC-01-089-5-06	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
10._UF_712	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
11._UF_712	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
12._UF_712	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
13._GC-01-089-5-06	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
14._UF_712	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG	TT
15._RUQ_1683	GG	CC	AG	__	CC	CC	AA	GG	TT	AA	AA	GG	GG	AT
16._MITC-000350	GG	CC	AG	__	CC	CC	AA	GG	TT	AA	AA	GG	GG	AT
17._MITC-000039	GG	CC	AG	__	CC	CC	AA	GG	TT	AA	AA	GG	GG	AT

	29	30	31	32	33	34	35	36	37	38
_Input profile	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
1._RUQ_1683	CC	__	GG	__	__	__	__	CC	__	__	X_X	X_X	X_X	X_X
2._UF_712	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
3._RUQ_1638	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
4._RUQ_1638	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
5._RUQ_1683	__	__	GG	__	__	__	TT	CC	GG	__	X_X	X_X	X_X	X_X
6._RUQ_1638	__	__	GG	__	__	__	TT	CC	GG	__	X_X	X_X	X_X	X_X
7._GC-01-089-5-06	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
8._GC-01-089-5-06	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
9._GC-01-089-5-06	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
10._UF_712	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
11._UF_712	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
12._UF_712	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X	X_X
13._GC-01-089-5-06	CC	CC	GG	TT	__	CC	TT	__	GG	CC	X_X	X_X	X_X	X_X
14._UF_712	CC	CC	GG	TT	__	CC	TT	__	GG	CC	X_X	X_X	X_X	X_X
15._RUQ_1683	__	__	CC	AA	CC	GG	AA	GG	GG	GG	X_X	X_X	X_X	X_X
16._MITC-000350	__	__	CC	AA	CC	GG	AA	GG	GG	GG	X_X	X_X	X_X	X_X
17._MITC-000039	__	__	CC	AA	CC	GG	AA	GG	GG	GG	X_X	X_X	X_X	X_X

Input profile: UF_712

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 6 Row 39 34_36

Dapeng Zhang, 2016

1._UF_712 RUQ_1683

identical
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

2._UF_712

97.4 %
38 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

3._UF_712 RUQ_1638

97.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._UF_712 RUQ_1638

97.4 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

5._UF_712 RUQ_1683

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._UF_712 RUQ_1638

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

7._UF_712 GC-01-089-5-06

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._UF_712 GC-01-089-5-06

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._UF_712 GC-01-089-5-06

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._UF_712

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 1

Dapeng Zhang, 2016

11._UF_712

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 2

Dapeng Zhang, 2016

12._UF_712

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 4

Dapeng Zhang, 2016

13._UF_712 GC-01-089-5-06

93.1 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._UF_712

93.1 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 3

Dapeng Zhang, 2016

15._UF_712 RUQ_1683

42.4 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._UF_712 MITC-000350

42.4 %
33 shared markers

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USDA-SHRS, United States of America

17._UF_712 MITC-000039

42.4 %
33 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP723	20	TcSNP872
21	TcSNP891	22	TcSNP917	23	TcSNP953	24	TcSNP994	25	TcSNP998
26	TcSNP1060	27	TcSNP1062	28	TcSNP1075	29	TcSNP1144	30	TcSNP1165
31	TcSNP1253	32	TcSNP1270	33	TcSNP1350	34	TcSNP1414	35	TcSNP1442
36	TcSNP1458	37	TcSNP1484	38	TcSNP1520