SNP Profiles of UF 712 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
1._RUQ_1638	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
2._RUQ_1638	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
3._RUQ_1683	__	__	CC	GG	TT	CC	CC	AA	CC	TT	__	GG	AA	CC
4._RUQ_1638	__	__	CC	GG	TT	CC	CC	AA	CC	TT	__	GG	AA	CC
5._RUQ_1683	__	__	CC	__	__	__	__	AA	__	__	__	__	AA	__
6._UF_712	CC	AA	CC	GG	TT	CC	CC	__	CC	TT	AA	GG	AA	CC
7._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
8._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
9._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
10._UF_712	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
11._UF_712	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
12._UF_712	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
13._GC-01-089-5-06	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
14._UF_712	CC	AA	CC	GG	TT	CC	CC	AA	CC	TT	AA	GG	AA	CC
15._RUQ_1683	CC	AA	CC	CC	AA	CC	GG	AA	GG	TT	AA	__	AA	__
16._MITC-000350	CC	AA	CC	CC	AA	CC	GG	AA	GG	TT	AA	__	AA	__
17._MITC-000039	CC	AA	CC	CC	AA	CC	GG	AA	GG	TT	AA	__	AA	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	GG	CC	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG
1._RUQ_1638	GG	GG	CC	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG
2._RUQ_1638	GG	GG	CC	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG
3._RUQ_1683	GG	GG	CC	CT	__	GG	GG	TT	__	__	__	AA	CC	__
4._RUQ_1638	GG	GG	CC	CT	__	GG	GG	TT	__	__	__	AA	CC	__
5._RUQ_1683	__	GG	__	__	GG	GG	GG	__	__	__	__	AA	__	GG
6._UF_712	GG	GG	TT	CT	GG	GG	GG	TT	CC	TT	TT	AA	CC	GG
7._GC-01-089-5-06	GG	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG
8._GC-01-089-5-06	GG	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG
9._GC-01-089-5-06	GG	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG
10._UF_712	GG	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG
11._UF_712	GG	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG
12._UF_712	GG	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG
13._GC-01-089-5-06	GG	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG
14._UF_712	GG	GG	CC	CT	AA	GG	GG	TT	CC	TT	TT	AA	CC	GG
15._RUQ_1683	CC	GG	CC	AG	__	CC	CC	AA	GG	TT	AA	AA	GG	GG
16._MITC-000350	CC	GG	CC	AG	__	CC	CC	AA	GG	TT	AA	AA	GG	GG
17._MITC-000039	CC	GG	CC	AG	__	CC	CC	AA	GG	TT	AA	AA	GG	GG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AT	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
1._RUQ_1638	AT	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
2._RUQ_1638	AT	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
3._RUQ_1683	__	__	__	GG	__	__	__	TT	CC	GG	__	X_X	X_X	X_X
4._RUQ_1638	__	__	__	GG	__	__	__	TT	CC	GG	__	X_X	X_X	X_X
5._RUQ_1683	__	CC	__	GG	__	__	__	__	CC	__	__	X_X	X_X	X_X
6._UF_712	AT	CC	CC	GG	TT	CC	CC	TT	CC	GG	CC	X_X	X_X	X_X
7._GC-01-089-5-06	TT	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X
8._GC-01-089-5-06	TT	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X
9._GC-01-089-5-06	TT	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X
10._UF_712	TT	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X
11._UF_712	TT	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X
12._UF_712	TT	CC	CC	GG	TT	__	CC	TT	CC	GG	CC	X_X	X_X	X_X
13._GC-01-089-5-06	TT	CC	CC	GG	TT	__	CC	TT	__	GG	CC	X_X	X_X	X_X
14._UF_712	TT	CC	CC	GG	TT	__	CC	TT	__	GG	CC	X_X	X_X	X_X
15._RUQ_1683	AT	__	__	CC	AA	CC	GG	AA	GG	GG	GG	X_X	X_X	X_X
16._MITC-000350	AT	__	__	CC	AA	CC	GG	AA	GG	GG	GG	X_X	X_X	X_X
17._MITC-000039	AT	__	__	CC	AA	CC	GG	AA	GG	GG	GG	X_X	X_X	X_X

Input profile: UF_712

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

1._UF_712 RUQ_1638

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._UF_712 RUQ_1638

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._UF_712 RUQ_1683

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._UF_712 RUQ_1638

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._UF_712 RUQ_1683

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

6._UF_712

97.4 %
38 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: La Montaña Lot 6 Row 39 34_36

Dapeng Zhang, 2016

7._UF_712 GC-01-089-5-06

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._UF_712 GC-01-089-5-06

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._UF_712 GC-01-089-5-06

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._UF_712

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 1

Dapeng Zhang, 2016

11._UF_712

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 2

Dapeng Zhang, 2016

12._UF_712

96.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 4

Dapeng Zhang, 2016

13._UF_712 GC-01-089-5-06

95.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._UF_712

95.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1506 3

Dapeng Zhang, 2016

15._UF_712 RUQ_1683

47.1 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._UF_712 MITC-000350

47.1 %
34 shared markers

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USDA-SHRS, United States of America

17._UF_712 MITC-000039

47.1 %
34 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP953	25	TcSNP994
26	TcSNP998	27	TcSNP1060	28	TcSNP1062	29	TcSNP1075	30	TcSNP1144
31	TcSNP1165	32	TcSNP1253	33	TcSNP1270	34	TcSNP1350	35	TcSNP1414
36	TcSNP1442	37	TcSNP1458	38	TcSNP1484	39	TcSNP1520