SNP Profiles of UF 677   View Data

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 Key

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_Input profile
GGATACGTCTACCGAGCTATGGAGCCCT
1._UF_677
GGATACGTCTACCGAGCTATGGAGCCCT
2._UF_677
GGATACGTCTACCGAGCTATGGAGCCCT
3._UF_677
GGATACGTCTACCGAGCTATGGAGCCCT
4._UF_677
GGATACGTCTACCGAGCTATGGAGCCCT
5._GC-01-027-2-04
GGATACGTCTACCGAGCTATGGAGCCCT
6._GC-01-027-2-04
GGATACGTCTACCGAGCTATGGAGCCCT
7._GC-01-027-2-04
GGATACGTCTACCGAGCTATGGAGCCCT
8._GC-01-027-2-04
GGATACGTCTACCGAGCTATGGAGCCCT
9._GC-01-027-2-04
GGATACGTCTACCGAGCTATGGAGCCCT
10._UF_677
GGATACGTCTACCGAGCTATGGAGCCCT
11._GC-01-027-2-04
GGATACGTCTACCGAGCTATGGAGCCCT
12._UF_677
GGATACGTCTACCGAGCTATGGAGCCCT
13._UF_677
GGATACGTCTAC__AGCTATGG__CCCT
 1516171819202122232425262728
_Input profile
GTCCACCTGGGTCGCCTTGGAACTAGCT
1._UF_677
GTCCACCTGGGTCGCCTTGGAACTAGCT
2._UF_677
GTCCACCTGGGTCGCCTTGGAACTAGCT
3._UF_677
GTCCACCTGGGTCGCCTTGGAACTAGCT
4._UF_677
GTCCACCTGGGTCGCCTTGGAACTAGCT
5._GC-01-027-2-04
GTCCACCTGGGTCGCCTTGGAACTAGCT
6._GC-01-027-2-04
GTCCACCTGGGTCGCCTTGGAACTAGCT
7._GC-01-027-2-04
GTCCACCTGGGTCGCCTTGGAACTAGCT
8._GC-01-027-2-04
GTCCACCTGGGTCGCCTTGGAACTAGCT
9._GC-01-027-2-04
GTCCACCTGGGTCGCCTTGGAACTAGCT
10._UF_677
GTCCACCTGGGTCGCCTTGGAACTAGCT
11._GC-01-027-2-04
GTCCACCTGGGTCGCCTTGGAACTAGCT
12._UF_677
GTCCACCTAGGTCGCCTTGGAACTAGCT
13._UF_677
__CCACCTAGGTCGCCTTGG__CT____
 293031323334353637383940  
_Input profile
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
1._UF_677
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
2._UF_677
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
3._UF_677
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
4._UF_677
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
5._GC-01-027-2-04
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
6._GC-01-027-2-04
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
7._GC-01-027-2-04
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
8._GC-01-027-2-04
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
9._GC-01-027-2-04
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
10._UF_677
AAAACTCTGTCC__TTCTCGAGCTX_XX_X
11._GC-01-027-2-04
AAAACTCTGTCC__TTCTCGAGCTX_XX_X
12._UF_677
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
13._UF_677
AAAA__CTGTCCAATTCTCGAG__X_XX_X

Input profile: UF_677

 
Mars Center for Cocoa Science, Brazil
Location: 1204 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._UF_677

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 5
 Dapeng Zhang, 2016

2._UF_677

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 10
 Dapeng Zhang, 2016

3._UF_677

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 11
 Dapeng Zhang, 2016

4._UF_677

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 6 > FP
 Dapeng Zhang, 2016

5._UF_677 GC-01-027-2-04

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._UF_677 GC-01-027-2-04

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._UF_677 GC-01-027-2-04

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

8._UF_677 GC-01-027-2-04

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._UF_677 GC-01-027-2-04

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._UF_677

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1204 13 > F
 Dapeng Zhang, 2016

11._UF_677 GC-01-027-2-04

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP2
 Mars, 2018

12._UF_677

98.8 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Row 43 7_9
 Dapeng Zhang, 2016

13._UF_677

98.4 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520