SNP Profiles of UF 676   View Data

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 Key

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_Input profile
GGATACGTCTACCGAGCTATGGAGCCCT
1._GC-08-080-2-03
GGATACGTCTACCGAGCTATGGAGCCCT
2._GC-08-080-2-03
GGATACGTCTACCGAGCTATGGAGCCCT
3._UF_676
GGATACGTCTACCGAGCTATGGAGCCCT
4._UF_676
GGATACGTCTACCGAGCTATGGAGCCCT
5._UF_676
GGATACGTCTACCGAGCTATGGAGCCCT
6._GC-08-080-2-03
GGATACGTCTACCGAGCTATGGAGCCCT
7._GC-08-080-2-03
GGATACGTCTACCGAGCTATGGAGCCCT
8._RUQ_56
____AC__CTACCGAG__AT________
9._UF_676
GGATACGTCTACCGAGCTATGGAGCCCT
10._RUQ_56
GGATACGTCTACCGAGCTATGGAGCCCT
11._UF_676
GGATACGTCTACCGAGCTATGGAGCCCT
12._RUQ_56
____ACGTCTACCGAGCTAT__AGCCCT
13._UF_676
GGATACGTCTACCGAGCTATGGAGCCCT
14._RUQ_56
____AC________AG________AC__
15._RUQ_56
GGATACACAGACCGAGAGATGG__CC__
16._MITC-000064
GGATACACAGACCGAGAGATGG__CC__
17._UF_676_Fld#_180_Plt#_2
GGATACACAGACCGAGAGATGG__CC__
 1516171819202122232425262728
_Input profile
GTCCACCTGGGTCGCCTTGGAACTAGCT
1._GC-08-080-2-03
GTCCACCTGGGTCGCCTTGGAACTAGCT
2._GC-08-080-2-03
GTCCACCTGGGTCGCCTTGGAACTAGCT
3._UF_676
GTCCACCTGGGTCGCCTTGGAACTAGCT
4._UF_676
GTCCACCTGGGTCGCCTTGGAACTAGCT
5._UF_676
GTCCACCTGGGTCGCCTTGGAACTAGCT
6._GC-08-080-2-03
GTCCACCTGGGTCGCCTTGGAACTAGCT
7._GC-08-080-2-03
GTCCACCTGGGTCGCCTTGGAACTAGCT
8._RUQ_56
__CCAC______CGCC______CT__CT
9._UF_676
GTCCACCTAGGTCGCCTTGGAACTAGCT
10._RUQ_56
GTCCACCTAGGTCGCCTTGGAACTAGCT
11._UF_676
GTCCACCTAGGTCGCCTTGGAACTAGCT
12._RUQ_56
GTCCAACT__GTCGCC________AGCT
13._UF_676
GTCCACCTAGGTCGCCTTGGAACTAGCT
14._RUQ_56
__CCAC__AGGTCG__________AG__
15._RUQ_56
ACCCACAG__ACCGGGAAGGAAAGAGAG
16._MITC-000064
ACCCACAG__ACCGGGAAGGAAAGAGAG
17._UF_676_Fld#_180_Plt#_2
ACCCACAG__ACCGGGAAGGAAAGAGAG
 293031323334353637383940  
_Input profile
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
1._GC-08-080-2-03
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
2._GC-08-080-2-03
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
3._UF_676
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
4._UF_676
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
5._UF_676
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
6._GC-08-080-2-03
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
7._GC-08-080-2-03
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
8._RUQ_56
__________________CG____X_XX_X
9._UF_676
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
10._RUQ_56
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
11._UF_676
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
12._RUQ_56
________GT______CTCGAG__X_XX_X
13._UF_676
AAAACTCTGTCCAATTCTGGAGCTX_XX_X
14._RUQ_56
AA__CT__GT________CG____X_XX_X
15._RUQ_56
AAAA____AAGGAAAAAGCGAGAGX_XX_X
16._MITC-000064
AAAA____AAGGAAAAAGCGAGAGX_XX_X
17._UF_676_Fld#_180_Plt#_2
AAAA____AAGGAAAAAGCGAGAGX_XX_X

Input profile: UF_676

 
Mars Center for Cocoa Science, Brazil
Location: 8203 7 > FP
 Dapeng Zhang, 2016

1._UF_676 GC-08-080-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

2._UF_676 GC-08-080-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._UF_676

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8203 3 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._UF_676

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8203 4 > FP
 Dapeng Zhang, 2016

5._UF_676

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8203 5 > FP
 Dapeng Zhang, 2016

6._UF_676 GC-08-080-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

7._UF_676 GC-08-080-2-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

8._UF_676 RUQ_56

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

9._UF_676

98.8 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

10._UF_676 RUQ_56

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._UF_676

98.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0245
 Dapeng Zhang, 2016

12._UF_676 RUQ_56

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._UF_676

97.5 %
40 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 293 I-043
 Dapeng Zhang, 2016

14._UF_676 RUQ_56

92.3 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

15._UF_676 RUQ_56

57.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._UF_676 MITC-000064

57.1 %
35 shared markers

USDA-SHRS, United States of America
 Mars, 2018

17._UF_676 UF_676_Fld#_180_Plt#_2

57.1 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 180, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520