SNP Profiles of UF 668   View Data

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 Key

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_Input profile
GGATACGTCTACCGAGCTATGGAGCTGT
1._UF_668
GGATACGTCTACCGAGCTATGGAGCTGT
2._UF_668
GGATACGTCTACCGAGCTATGGAGCTGT
3._UF_668
GGATACGTCTACCGAGCTATGGAGCTGT
4._UF_668
GGATACGTCTACCGAGCTATGGAGCTGT
5._GC-01-077-4-13
GGATACGTCTACCGAGCTATGGAGCTGT
6._GC-01-077-4-13
GGATACGTCTACCGAGCTATGGAGCTGT
7._GC-01-077-4-13
GGATACGTCTACCGAGCTATGGAGCTGT
8._GC-01-077-4-13
GGATACGTCTACCGAGCTATGGAGCTGT
9._GC-01-077-4-13
GGATACGTCTACCGAGCTATGGAGCTGT
10._UF_668
GGATACGTCTAC__AGCTATGG__CT__
11._UF_668
GGATACGTCTAC__AGCTATGG__CT__
12._UF_668
GGATACGT__AC__AGCT__GG__CT__
13._UF_668
GGATACGTCTACCGAGCTATGGAGCTGT
14._UF_668_Fld#_118_Plt#_6
GGATACACAGACCGAGAGATGG____AC
 1516171819202122232425262728
_Input profile
CCACCTGGGTCGCCTTGGAACTAGCTAA
1._UF_668
CCACCTGGGTCGCCTTGGAACTAGCTAA
2._UF_668
CCACCTGGGTCGCCTTGGAACTAGCTAA
3._UF_668
CCACCTGGGTCGCCTTGGAACTAGCTAA
4._UF_668
CCACCTGGGTCGCCTTGGAACTAGCTAA
5._GC-01-077-4-13
CCACCTGGGTCGCCTTGGAACTAGCTAA
6._GC-01-077-4-13
CCACCTGGGTCGCCTTGGAACTAGCTAA
7._GC-01-077-4-13
CCACCTGGGTCGCCTTGGAACTAGCTAA
8._GC-01-077-4-13
CCACCTGGGTCGCCTTGGAACTAGCTAA
9._GC-01-077-4-13
CCACCTGGGTCGCCTTGGAACTAGCTAA
10._UF_668
CCACCTAGGTCGCCTTGG__CT____AA
11._UF_668
CCACCTAGGTCGCCTTGG__CT____AA
12._UF_668
CC__CTAGGTCGCCTTGG__CT____AA
13._UF_668
CCACCTAGGTCGCCTTGGAACTAGCTAA
14._UF_668_Fld#_118_Plt#_6
CCACAG__ACCGGGAAGGAAAGAGAGAA
 2930313233343536373839   
_Input profile
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
1._UF_668
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
2._UF_668
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
3._UF_668
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
4._UF_668
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
5._GC-01-077-4-13
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
6._GC-01-077-4-13
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
7._GC-01-077-4-13
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
8._GC-01-077-4-13
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
9._GC-01-077-4-13
AACTCTGTCCAATTCTCGAGCTX_XX_XX_X
10._UF_668
AA__CTGTCCAATTCTCGAG__X_XX_XX_X
11._UF_668
AA__CTGTCCAATTCTCGAG__X_XX_XX_X
12._UF_668
AA__CTGTCCAATTCTCG____X_XX_XX_X
13._UF_668
AACTCTGTCCAATTCTCGGGCTX_XX_XX_X
14._UF_668_Fld#_118_Plt#_6
AA____AAGGAAAAAGCGAGAGX_XX_XX_X

Input profile: UF_668

 
Mars Center for Cocoa Science, Brazil
Location: 1413 7 > FP
 Dapeng Zhang, 2016

1._UF_668

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 6
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._UF_668

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 13
 Dapeng Zhang, 2016

3._UF_668

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 16 > F
 Dapeng Zhang, 2016

4._UF_668

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 5 > FP
 Dapeng Zhang, 2016

5._UF_668 GC-01-077-4-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

6._UF_668 GC-01-077-4-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._UF_668 GC-01-077-4-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

8._UF_668 GC-01-077-4-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

9._UF_668 GC-01-077-4-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

10._UF_668

98.4 %
31 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

11._UF_668

98.4 %
31 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

12._UF_668

98.1 %
27 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 8 Row 27 31_33
 Dapeng Zhang, 2016

13._UF_668

97.4 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

14._UF_668 UF_668_Fld#_118_Plt#_6

55.9 %
34 shared markers

USDA-TARS, United States of America
Location: Field: 118, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520