SNP Profiles of UF 668   View Data

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 Key

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_Input profile
GGATACGTCTACCGAGCTATGGAGCCCT
1._UF_668
GGATACGTCTACCGAGCTATGGAGCCCT
2._UF_668
GGATACGTCTACCGAGCTATGGAGCCCT
3._UF_668
GGATACGTCTACCGAGCTATGGAGCCCT
4._GC-01-077-4-13
GGATACGTCTACCGAGCTATGGAGCCCT
5._GC-01-077-4-13
GGATACGTCTACCGAGCTATGGAGCCCT
6._GC-01-077-4-13
GGATACGTCTACCGAGCTATGGAGCCCT
7._GC-01-077-4-13
GGATACGTCTACCGAGCTATGGAGCCCT
8._UF_668
GGATACGTCTACCGAGCTATGGAG__CT
9._GC-01-077-4-13
GGATACGTCTACCGAGCTATGGAG__CT
10._UF_668
GGATACGTCTAC__AGCTATGG__CCCT
11._UF_668
GGATACGTCTAC__AGCTATGG__CCCT
12._UF_668
GGATACGT__AC__AGCT__GG__CCCT
13._UF_668
GGATACGTCTACCGAGCTATGGAGCCCT
14._UF_668_Fld#_118_Plt#_6
GGATACACAGACCGAGAGATGG__CC__
 1516171819202122232425262728
_Input profile
GTCCACCTGGGTCGCCTTGGAACTAGCT
1._UF_668
GTCCACCTGGGTCGCCTTGGAACTAGCT
2._UF_668
GTCCACCTGGGTCGCCTTGGAACTAGCT
3._UF_668
GTCCACCTGGGTCGCCTTGGAACTAGCT
4._GC-01-077-4-13
GTCCACCTGGGTCGCCTTGGAACTAGCT
5._GC-01-077-4-13
GTCCACCTGGGTCGCCTTGGAACTAGCT
6._GC-01-077-4-13
GTCCACCTGGGTCGCCTTGGAACTAGCT
7._GC-01-077-4-13
GTCCACCTGGGTCGCCTTGGAACTAGCT
8._UF_668
GTCCACCTGGGTCGCCTTGGAACTAGCT
9._GC-01-077-4-13
GTCCACCTGGGTCGCCTTGGAACTAGCT
10._UF_668
__CCACCTAGGTCGCCTTGG__CT____
11._UF_668
__CCACCTAGGTCGCCTTGG__CT____
12._UF_668
__CC__CTAGGTCGCCTTGG__CT____
13._UF_668
GTCCACCTAGGTCGCCTTGGAACTAGCT
14._UF_668_Fld#_118_Plt#_6
ACCCACAG__ACCGGGAAGGAAAGAGAG
 293031323334353637383940  
_Input profile
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
1._UF_668
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
2._UF_668
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
3._UF_668
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
4._GC-01-077-4-13
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
5._GC-01-077-4-13
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
6._GC-01-077-4-13
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
7._GC-01-077-4-13
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
8._UF_668
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
9._GC-01-077-4-13
AAAACTCTGTCCAATTCTCGAGCTX_XX_X
10._UF_668
AAAA__CTGTCCAATTCTCGAG__X_XX_X
11._UF_668
AAAA__CTGTCCAATTCTCGAG__X_XX_X
12._UF_668
AAAA__CTGTCCAATTCTCG____X_XX_X
13._UF_668
AAAACTCTGTCCAATTCTCGGGCTX_XX_X
14._UF_668_Fld#_118_Plt#_6
AAAA____AAGGAAAAAGCGAGAGX_XX_X

Input profile: UF_668

 
Mars Center for Cocoa Science, Brazil
Location: 1413 16 > F
 Dapeng Zhang, 2016

1._UF_668

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 6
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._UF_668

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 13
 Dapeng Zhang, 2016

3._UF_668

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 5 > FP
 Dapeng Zhang, 2016

4._UF_668 GC-01-077-4-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

5._UF_668 GC-01-077-4-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._UF_668 GC-01-077-4-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

7._UF_668 GC-01-077-4-13

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

8._UF_668

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1413 7 > FP
 Dapeng Zhang, 2016

9._UF_668 GC-01-077-4-13

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

10._UF_668

98.4 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

11._UF_668

98.4 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

12._UF_668

98.2 %
28 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 8 Row 27 31_33
 Dapeng Zhang, 2016

13._UF_668

97.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

14._UF_668 UF_668_Fld#_118_Plt#_6

57.1 %
35 shared markers

USDA-TARS, United States of America
Location: Field: 118, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520